STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10451Best DB hits: BLAST: pir:G70946; probable dioxygenase (EC 1.14.-.-) Rieske iron-sulfur; E=3e-18 pir:T14542; choline monooxygenase - beet ----- gb: AAB80954.1; E=2e-15 pir:G83331; anthranilate dioxygenase large subunit PA2512 [imported]; E=4e-14 COG: Rv3161c; COG2146 Ferredoxin subunits of nitrite reductase and; E=3e-19 PFAM: PF00355; Rieske [2Fe-2S] domain; E=1.8e-21. (386 aa)    
Predicted Functional Partners:
RB10446
Beta keto-acyl synthase; Best DB hits: BLAST: ddbj:BAA89384.1; (AB025342) ORF10 [Moritella marina]; E=3e-37 pir:T30185; hypothetical protein 7 - Shewanella sp ----- gb:; E=3e-36 pir:T37057; probable multi-domain beta keto-acyl synthase -; E=8e-35 COG: DR1945; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=3e-17 Rv3391_1; COG0451 Nucleoside-diphosphate-sugar epimerases; E=2e-14 BH2492; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=2e-13 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=7.7e-09 PF02801; Beta-ketoacyl synthase, C-ter; E=7.6e-61 PF00109; Beta-ketoacyl syntha [...]
 
   
 0.876
chcA
1-cyclohexenylcarbonyl CoA reductase-short chain family oxidoreductase; PMID: 8955309 PMID: 10973220 best DB hits: BLAST: gb:AAC44655.1; (U72144) 1-cyclohexenylcarbonyl CoA reductase; E=4e-40 pir:B69802; glucose 1-dehydrogenase homolog yfhR - Bacillus subtilis; E=4e-37 ddbj:BAB04657.1; (AP001510) glucose 1-dehydrogenase [Bacillus; E=2e-34 COG: BS_yfhR; COG1028 Dehydrogenases with different specificities; E=4e-38 BH0938; COG1028 Dehydrogenases with different specificities (related; E=2e-35 BS_fabG; COG1028 Dehydrogenases with different specificities; E=3e-26 PFAM: PF00106; short chain d [...]
       0.778
RB10445
Hypothetical protein.
       0.773
RB10456
Hypothetical protein-transmembrane prediction.
       0.594
RB2238
Flavohemoprotein; PMID: 8125952 best DB hits: BLAST: swissprot:P39662; HMPA_ALCEU FLAVOHEMOPROTEIN (HEMOGLOBIN-LIKE; E=7e-29 swissprot:P49852; HMPA_BACSU FLAVOHEMOPROTEIN (HEMOGLOBIN-LIKE; E=2e-26 swissprot:P26353; HMPA_SALTY FLAVOHEMOPROTEIN (HEMOGLOBIN-LIKE; E=2e-26 COG: BS_hmp_2; COG1018 Flavodoxin reductases (ferredoxin-NADPH; E=1e-27 hmp_2; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases); E=5e-25 BH1058_2; COG1018 Flavodoxin reductases (ferredoxin-NADPH; E=5e-23 PFAM: PF00970; Oxidoreductase FAD-binding doma; E=3.5e-24 PF01794; Ferric reductase like transmemb; E=0.76 P [...]
 
  
 0.583
RB10442
Probable methyltransferase or Fe-S oxidoreductase; Best DB hits: BLAST: swissprot:P42349; YC42_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=1e-97 swissprot:Q55914; Y309_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=2e-28 swissprot:O58549; Y819_PYRHO HYPOTHETICAL METHYLTRANSFERASE PH0819; E=3e-18 COG: sll1242; COG1032 Fe-S oxidoreductases family 2; E=9e-99.
       0.527
betA
GMC oxidoreductase; PMID: 92177421 best DB hits: BLAST: pir:C75453; GMC oxidoreductase - Deinococcus radiodurans (strain R1); E=9e-35 swissprot:Q00593; ALKJ_PSEOL ALCOHOL DEHYDROGENASE [ACCEPTOR]; E=3e-28 embl:CAB51051.1; (AJ233397) alcohol dehydrogenase [Pseudomonas; E=3e-25 COG: DR0965; COG2303 Choline dehydrogenase and related flavoproteins; E=9e-36 PFAM: PF01494; FAD binding domain; E=0.085 PF00732; GMC oxidoreductases; E=2.3e-09 PF01583; Adenylylsulfate kinase; E=0.85.
 
   
 0.427
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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