STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10460Hypothetical protein. (473 aa)    
Predicted Functional Partners:
hemY
Protoporphyrinogen IX and coproporphyrinogen III oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
       0.752
RB10462
Hypothetical protein.
       0.557
fpr
Probable ferredoxin--NADP reductase; PMID: 8449868 PMID: 7961651 PMID: 9149148 best DB hits: BLAST: swissprot:P28861; FENR_ECOLI FERREDOXIN--NADP REDUCTASE (FNR); E=3e-10 pdb:1FDR; Flavodoxin Reductase From E. Coli; E=3e-10 pir:F82624; ferredoxin-NADP reductase XF1889 [imported] - Xylella; E=5e-10 COG: fpr; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases); E=3e-11 slr1643; COG0369 Sulfite reductase flavoprotein subunit; E=0.005 PFAM: PF00970; Oxidoreductase FAD-binding doma; E=0.015 PF00175; Oxidoreductase FAD/NAD-binding; E=1.2e-06.
       0.556
grp
RNA-binding protein; PMID: 7541909 best DB hits: BLAST: ddbj:BAA08402.1; (D49424) RNA-binding protein [Anabaena; E=4e-16 pir:S58673; RNA-binding protein RbpC - Anabaena variabilis; E=4e-16 pir:S77263; RNA-binding protein ssr1480 - Synechocystis sp. (strain; E=1e-15 COG: ssr1480; COG0724 RNA-binding proteins (RRM domain); E=1e-16 PFAM: PF00076; RNA recognition motif. (a.k.a. RRM,; E=2.9e-31.
       0.519
glgC
Glucose-1-phosphate adenylyltransferase; PMID: 1325205 best DB hits: BLAST: swissprot:P30521; GLGC_ANASP GLUCOSE-1-PHOSPHATE; E=1e-102 prf:1905422A; ADP-glucose pyrophosphorylase [Synechocystis sp.]; E=1e-101 swissprot:P52415; GLGC_SYNY3 GLUCOSE-1-PHOSPHATE; E=1e-101 COG: slr1176; COG0448 ADP-glucose pyrophosphorylase; E=1e-102 MTH1759; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylases; E=3e-27 BH1086; COG0448 ADP-glucose pyrophosphorylase; E=3e-13 PFAM: PF00483; Nucleotidyl transferase; E=8.7e-62 PF00132; Bacterial transferase hexapep; E=0.029; Belongs to the bacterial/plant glu [...]
       0.422
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.