Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
fprProbable ferredoxin--NADP reductase; PMID: 8449868 PMID: 7961651 PMID: 9149148 best DB hits: BLAST: swissprot:P28861; FENR_ECOLI FERREDOXIN--NADP REDUCTASE (FNR); E=3e-10 pdb:1FDR; Flavodoxin Reductase From E. Coli; E=3e-10 pir:F82624; ferredoxin-NADP reductase XF1889 [imported] - Xylella; E=5e-10 COG: fpr; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases); E=3e-11 slr1643; COG0369 Sulfite reductase flavoprotein subunit; E=0.005 PFAM: PF00970; Oxidoreductase FAD-binding doma; E=0.015 PF00175; Oxidoreductase FAD/NAD-binding; E=1.2e-06. (324 aa)    
Predicted Functional Partners:
RB10462
Hypothetical protein.
       0.773
glgC
Glucose-1-phosphate adenylyltransferase; PMID: 1325205 best DB hits: BLAST: swissprot:P30521; GLGC_ANASP GLUCOSE-1-PHOSPHATE; E=1e-102 prf:1905422A; ADP-glucose pyrophosphorylase [Synechocystis sp.]; E=1e-101 swissprot:P52415; GLGC_SYNY3 GLUCOSE-1-PHOSPHATE; E=1e-101 COG: slr1176; COG0448 ADP-glucose pyrophosphorylase; E=1e-102 MTH1759; COG1208 Nucleoside-diphosphate-sugar pyrophosphorylases; E=3e-27 BH1086; COG0448 ADP-glucose pyrophosphorylase; E=3e-13 PFAM: PF00483; Nucleotidyl transferase; E=8.7e-62 PF00132; Bacterial transferase hexapep; E=0.029; Belongs to the bacterial/plant glu [...]
       0.570
RB10460
Hypothetical protein.
       0.556
hemY
Protoporphyrinogen IX and coproporphyrinogen III oxidase; Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX.
       0.542
RB11231
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAB90342.1; (AE001041) A. fulgidus predicted coding region; E=0.001 COG: AF0913; COG1416 Uncharacterized ACR; E=1e-04 PFAM: PF01406; tRNA synthetases class I (C); E=0.52.
  
     0.515
cft
Probable cycloinulo-oligosaccharide fructanotransferase; PMID: 11157277 best DB hits: BLAST: gb:AAG47946.1; AF222787_1 (AF222787) cycloinulo-oligosaccharide; E=2e-04 pir:T35944; probable beta-galactosidase - Streptomyces coelicolor; E=5e-04 pir:T18266; cycloinulo-oligosaccharide fructanotransferase (EC; E=0.030 PFAM: PF02012; BNR repeat; E=0.23.
  
     0.512
RB6282
Hypothetical protein.
  
     0.500
RB5832
Hypothetical protein.
  
     0.473
RB3034
Hypothetical protein-signal peptide prediction.
  
     0.465
RB5272
Conserved hypothetical protein; PMID: 9389475 best DB hits: BLAST: gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=0.006 gb:AAG09249.1; AF176640_2 (AF176640) alcohol dehydrogenase; E=0.20 gb:AAD56237.2; AF184915_1 (AF184915) methanol dehydrogenase large; E=0.22 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=5e-04 PFAM: PF01011; PQQ enzyme repeat; E=0.022.
  
     0.416
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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