STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10481Hypothetical protein. (82 aa)    
Predicted Functional Partners:
RB10483
Hypothetical protein.
       0.773
RB10479
Conserved hypothetical protein-putative transmembrane protein; Best DB hits: BLAST: pir:F70091; hypothetical protein yydH - Bacillus subtilis -----; E=2e-06 pir:H70326; hypothetical protein aq_294 - Aquifex aeolicus -----; E=0.29 PFAM: PF02163; Sterol-regulatory element bindi; E=0.039.
       0.689
RB10478
Probable AcrA/AcrE family protein-putative secreted protein; Best DB hits: BLAST: pir:E82436; AcrAAcrE family protein VCA0639 [imported] - Vibrio; E=7e-04 pir:C70415; cation efflux system (czcB-like) - Aquifex aeolicus; E=0.040 pir:D83099; probable RND efflux membrane fusion protein precursor; E=0.50 COG: VCA0639; COG0845 Membrane-fusion protein; E=6e-05 PFAM: PF00364; Biotin-requiring enzyme; E=0.0048 PF00529; HlyD family secretion protein; E=0.0018.
       0.502
RB10473
Best DB hits: BLAST: pir:D71687; alkaline proteinase secretion protein apre (aprE) RP314; E=0.032 pir:E82263; conserved hypothetical protein VC0913 [imported] -; E=0.053 gb:AAK03081.1; (AE006139) unknown [Pasteurella multocida]; E=0.13 COG: RP314; COG0845 Membrane-fusion protein; E=0.003 PFAM: PF01590; GAF domain; E=0.00029 PF00364; Biotin-requiring enzyme; E=0.0022.
       0.496
recQ
recQ; PMID: 3027506 PMID: 3027506 best DB hits: BLAST: gb:AAA24517.1; (M30198) recQ [Escherichia coli]; E=2e-78 gb:AAA67618.1; (M87049) DNA-dependent ATPase, DNA helicase; E=2e-78 pir:BVECRQ; DNA helicase recQ - Escherichia coli (strain K-12); E=2e-78 COG: recQ; COG0514 Superfamily II DNA helicase; E=2e-79 PFAM: PF00270; DEAD/DEAH box helicase; E=2.7e-39 PF00271; Helicase conserved C-terminal doma; E=2.1e-28.
       0.483
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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