STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10507Alpha-glucosidase; PMID: 8955399 best DB hits: BLAST: gb:AAC44671.1; (U66897) alpha-glucosidase [Bacteroides; E=4e-42 PFAM: PF01729; Quinolinate phosphoribosyl transfera; E=0.71. (645 aa)    
Predicted Functional Partners:
scrK
Probable fructokinase; PMID: 1809835 PMID: 10411273 best DB hits: BLAST: gb:AAG60871.1; AF322012_176 (AF322013) ID402 [Bradyrhizobium; E=5e-08 gb:AAK03933.1; (AE006222) unknown [Pasteurella multocida]; E=2e-06 pir:G75112; fructokinase (EC 2.7.1.4) PAB0482 - Pyrococcus abyssi; E=2e-05 COG: PAB0482; COG0524 Sugar kinases, ribokinase family; E=2e-06 PFAM: PF00294; pfkB family carbohydrate kinase; E=2.5e-12.
 
  
  0.930
malQ
4-alpha-glucanotransferase; PMID: 10677288 best DB hits: BLAST: swissprot:O87172; MALQ_THEAQ 4-ALPHA-GLUCANOTRANSFERASE; E=1e-119 swissprot:P72785; MALQ_SYNY3 4-ALPHA-GLUCANOTRANSFERASE; E=1e-118 swissprot:P29851; MALQ_STRPN 4-ALPHA-GLUCANOTRANSFERASE; E=1e-114 COG: sll1676; COG1640 4-alpha-glucanotransferase; E=1e-119 PFAM: PF02446; 4-alpha-glucanotransferase; E=3.9e-185.
 
  
  0.915
RB2986
Oligo-1,6-glucosidase; PMID: 9692189 best DB hits: BLAST: pir:JE0181; oligo-1,6-glucosidase (EC 3.2.1.10) - Bacillus; E=1e-143 ddbj:BAB18518.1; (AB003697) oligo-1,6-glucosidase [Bacillus; E=1e-143 gb:AAD50603.1; AF096282_1 (AF096282) alpha-glucosidase [Thermus; E=1e-141 COG: DR1375; COG0366 Glycosidases; E=1e-140 PFAM: PF00128; Alpha amylase, catalytic domain; E=1.8e-99.
   
  0.907
RB2160
Alpha-amylase; PMID: 2453362 best DB hits: BLAST: swissprot:P09961; AMY1_DICTH ALPHA-AMYLASE 1 (1,4-ALPHA-D-GLUCAN; E=1e-120 ddbj:BAA22063.1; (D88253) 4-alpha-glucanotransferase; E=1e-114 ddbj:BAA22062.1; (D87907) 4-alpha-glucanotransferase [Pyrococcus; E=1e-112 COG: PAB0118; COG1449 Alpha-amylase/alpha-mannosidase; E=1e-111 Rv3031; COG1543 Uncharacterized ACR; E=1e-04.
     
  0.900
RB5196
Alpha-amylase, amylosucrase; PMID: 9882648 PMID: 10411273 best DB hits: BLAST: embl:CAA09772.1; (AJ011781) amylosucrase [Neisseria; E=1e-165 pir:C75457; alpha-amlyase - Deinococcus radiodurans (strain R1); E=1e-123 pir:E75322; probable trehalose synthase - Deinococcus radiodurans; E=4e-41 COG: DR0933; COG0366 Glycosidases; E=1e-124 PFAM: PF00128; Alpha amylase, catalytic domain; E=1.5e-26.
    
  0.900
RB5832
Hypothetical protein.
     
  0.900
RB13150
Sialic-acid O-acetylesterase; PMID: 8662838 best DB hits: BLAST: gb:AAB07813.1; (U40408) sialic-acid O-acetylesterase [Mus; E=2e-19 embl:CAA67214.1; (X98625) sialic acid-specific 9-O-acetylesterase; E=7e-19 gb:AAD55976.1; (AF156856) cytosolic sialic acid; E=9e-15.
  
     0.677
RB9651
Sialic acid-specific 9-O-acetylesterase; PMID: 97078679 PMID: 8662838 PMID: 10464298 PMID: 8918804 best DB hits: BLAST: embl:CAA67214.1; (X98625) sialic acid-specific 9-O-acetylesterase; E=3e-37 gb:AAB07813.1; (U40408) sialic-acid O-acetylesterase [Mus; E=6e-37 pir:T46250; hypothetical protein DKFZp761A051.1 - human (fragment); E=1e-34.
  
     0.663
RB6807
Sialic acid-specific 9-O-acetylesterase; PMID: 8918804 best DB hits: BLAST: embl:CAA67214.1; (X98625) sialic acid-specific 9-O-acetylesterase; E=5e-31 gb:AAB07813.1; (U40408) sialic-acid O-acetylesterase [Mus; E=9e-31 gb:AAD55976.1; (AF156856) cytosolic sialic acid; E=5e-28.
  
     0.655
RB10048
Sialic acid-specific 9-O-acetylesterase; PMID: 97078679 best DB hits: BLAST: embl:CAA67214.1; (X98625) sialic acid-specific 9-O-acetylesterase; E=1e-32 gb:AAB07813.1; (U40408) sialic-acid O-acetylesterase [Mus; E=2e-32 gb:AAD55976.1; (AF156856) cytosolic sialic acid; E=2e-29.
  
     0.654
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.