STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yeaCBest DB hits: BLAST: pir:C69791; methanol dehydrogenase regulation homolog yeaC -; E=4e-73 ddbj:BAB04323.1; (AP001509) methanol dehydrogenase regulatory; E=6e-73 pir:S75782; methanol dehydrogenase regulatory protein -; E=3e-70 COG: BS_yeaC; COG0714 MoxR-like ATPases; E=4e-74 PFAM: PF00004; ATPase family associated with; E=5.2e-06 PF01078; Magnesium chelatase, subunit; E=3.4e-13. (314 aa)    
Predicted Functional Partners:
RB10512
Best DB hits: BLAST: pir:A75496; conserved hypothetical protein - Deinococcus radiodurans; E=1e-12 pir:F83287; hypothetical protein PA2873 [imported] - Pseudomonas; E=8e-11 pir:F70464; hypothetical protein aq_1912 - Aquifex aeolicus -----; E=1e-10 COG: DR0620_2; COG1305 Transglutaminase-like enzymes, putative cysteine; E=2e-13 PFAM: PF01841; Transglutaminase-like superfam; E=3e-17.
 
     0.927
RB10515
Best DB hits: BLAST: pir:H71125; hypothetical protein PH0774 - Pyrococcus horikoshii; E=6e-06 pir:T34965; probable membrane protein - Streptomyces coelicolor; E=7e-05 pir:A75012; conserved hypothetical protein PAB1277 - Pyrococcus; E=1e-04 COG: PH0774; COG1721 Uncharacterized ACR; E=5e-07 PFAM: PF01882; Protein of unknown function DUF58; E=5.4e-20.
 
    0.897
cmk
Cytidylate kinase; PMID: 9126287 best DB hits: BLAST: swissprot:Q49885; KCY_MYCLE CYTIDYLATE KINASE (CK) (CYTIDINE; E=2e-30 swissprot:Q9RC80; KCY_BACHD CYTIDYLATE KINASE (CK) (CYTIDINE; E=5e-30 pir:S75604; pantothenate synthetase panC - Synechocystis sp. (strain; E=3e-29 COG: BH1634; COG0283 Cytidylate kinase; E=5e-31 PFAM: PF02223; Thymidylate kinase; E=0.42 PF00485; Phosphoribulokinase / Uridine; E=0.094 PF01202; Shikimate kinase; E=3.5e-05.
  
    0.779
cinA
Conserved hypothetical protein-putative related to competence-damage inducible protein; Best DB hits: BLAST: pir:F83378; hypothetical protein PA2141 [imported] - Pseudomonas; E=7e-08 pir:B82935; conserved hypothetical UU083 [imported] - Ureaplasma; E=9e-08 pir:G71875; hypothetical protein jhp0886 - Helicobacter pylori; E=2e-07 COG: PA2141; COG1546 Uncharacterized protein (competence- and; E=7e-09 PFAM: PF02464; Competence-damaged protein; E=8.7e-13; Belongs to the CinA family.
       0.773
RB11916
Conserved hypothetical protein-putative protease; PMID: 99009353 PMID: 10086841 best DB hits: BLAST: pir:F70464; hypothetical protein aq_1912 - Aquifex aeolicus -----; E=1e-13 ddbj:BAB04325.1; (AP001509) BH0606~unknown conserved protein; E=4e-10 pir:F83287; hypothetical protein PA2873 [imported] - Pseudomonas; E=3e-07 COG: aq_1912; COG1305 Transglutaminase-like enzymes, putative cysteine; E=1e-14 PFAM: PF01841; Transglutaminase-like superfam; E=7e-11.
  
     0.722
RB10518
Hypothetical protein.
       0.522
dprA
Best DB hits: BLAST: pir:F81236; DNA processing chain A NMB0116 [imported] - Neisseria; E=5e-47 pir:C82009; DprA homolog NMA0158 [imported] - Neisseria meningitidis; E=4e-46 pir:G82369; smf protein VC0048 [imported] - Vibrio cholerae (group; E=8e-44 COG: NMB0116; COG0758 Predicted Rossmann-fold nucleotide-binding protein; E=5e-48 PFAM: PF00633; Helix-hairpin-helix motif; E=0.15 PF02481; SMF family; E=2.4e-83.
       0.400
RB10521
Hypothetical protein.
       0.400
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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