Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
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Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RB10556Hypothetical protein-signal peptide prediction. (134 aa)    
Predicted Functional Partners:
sdhB
Succinate dehydrogenase subunit B; PMID: 98404057 best DB hits: BLAST: embl:CAA69873.1; (Y08563) succinate dehydrogenase subunit B; E=6e-60 ddbj:BAB06810.1; (AP001517) succinate dehydrogenase iron-sulfur; E=1e-58 swissprot:P08066; DHSB_BACSU SUCCINATE DEHYDROGENASE IRON-SULFUR; E=2e-57 COG: BH3091; COG0479 Succinate dehydrogenase/fumarate reductase Fe-S; E=1e-59.
  
    0.780
sdhA
Succinate dehydrogenase subunit A; PMID: 98404057 best DB hits: BLAST: embl:CAA69872.1; (Y08563) succinate dehydrogenase subunit A; E=1e-175 ddbj:BAB06811.1; (AP001517) succinate dehydrogenase flavoprotein; E=1e-171 pir:A27763; succinate dehydrogenase (EC 1.3.99.1) flavoprotein -; E=1e-168 COG: BH3092; COG1053 Succinate dehydrogenase/fumarate reductase,; E=1e-172 PFAM: PF01494; FAD binding domain; E=0.0041 PF02032; Phytoene dehydrogenase related; E=0.46 PF00070; Pyridine nucleotide-disulphide; E=0.019.
  
    0.542
sdhC
Succinate dehydrogenase cytochrome B-558 subunit; PMID: 3086287 PMID: 3027051 PMID: 3036777 best DB hits: BLAST: swissprot:P08064; DHSC_BACSU SUCCINATE DEHYDROGENASE CYTOCHROME; E=2e-23 embl:CAA69871.1; (Y08563) succinate dehydrogenase subunit C; E=6e-20 ddbj:BAB06812.1; (AP001517) succinate dehydrogenase cytochrome; E=1e-19 COG: BS_sdhC; COG2009 Succinate dehydrogenase/fumarate reductase; E=2e-24.
       0.454
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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