Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10563Hypothetical protein. (198 aa)    
Predicted Functional Partners:
RB10558
Calmodulin-like membrane associated Ca(2+)-binding protein; Best DB hits: BLAST: ddbj:BAA95412.1; (AB036744) This protein has 3 calmodulin-like; E=0.002 ddbj:BAB03079.1; (AP001313) calmodulin-like protein [Arabidopsis; E=0.016 pir:A31797; Spec-related protein (clone LpS1) - sea urchin; E=0.032 PFAM: PF00036; EF hand; E=0.096.
       0.527
RB10560
Hypothetical protein-putative GSP protein; Best DB hits: PFAM: PF00263; Bacterial type II and III secretio; E=0.066.
       0.527
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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