Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10583Conserved hypothetical protein-putative containing TPR-repeat; Best DB hits: BLAST: pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=1e-05 ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo; E=0.12 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=0.12 COG: aq_854; COG0457 TPR-repeat-containing proteins; E=1e-06 PFAM: PF00515; TPR Domain; E=0.059. (1058 aa)    
Predicted Functional Partners:
RB5756
Hypothetical protein-transmembrane prediction.
  
     0.760
RB874
Hypothetical protein; PMID: 11481431.
  
     0.738
RB7238
Hypothetical protein-transmembrane prediction.
  
     0.716
RB1651
Conserved hypothetical protein-putative Fe-S oxidoreductases; PMID: 8688087 best DB hits: BLAST: swissprot:Q57970; Y550_METJA HYPOTHETICAL PROTEIN MJ0550 -----; E=2e-04 gb:AAG20125.1; (AE005091) Vng1941c [Halobacterium sp. NRC-1]; E=0.006 gb:AAB90230.1; (AE001034) conserved hypothetical protein; E=0.15 COG: MJ0550; COG1244 Predicted Fe-S oxidoreductases; E=2e-05.
  
     0.686
RB3603
Similar to peptidase yuxL; PMID: 9384377 best DB hits: BLAST: gb:AAB01192.1; (U55864) apical gut membrane polyprotein; E=0.015 embl:CAB60199.1; (AJ250881) P1a6 protein [Haemonchus contortus]; E=0.015 swissprot:P39839; YUXL_BACSU PROBABLE PEPTIDASE YUXL -----; E=0.034 COG: BS_yuxL; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=0.003 HI0382; COG0823 Periplasmic component of the Tol biopolymer; E=0.007.
  
     0.628
RB9598
Hypothetical protein.
  
     0.605
RB10590
PMID: 10368134 best DB hits: BLAST: swissprot:P75920; MDOC_ECOLI GLUCANS BIOSYNTHESIS PROTEIN MDOC; E=2e-10 gb:AAG55793.1; AE005315_7 (AE005315) orf, hypothetical protein; E=2e-09 embl:CAB77037.1; (AJ245997) hypothetical protein [Xanthomonas; E=0.003 PFAM: PF00023; Ank repeat; E=1e-05.
 
     0.604
RB105
Probable cysteine proteinase; PMID: 9389475 PMID: 7548211 best DB hits: BLAST: gb:AAB89309.1; (AE000969) cysteine proteinase, putative; E=8e-04 gb:AAG54838.1; AE005229_1 (AE005229) putative RTX family exoprotein; E=0.19 gb:AAD56325.1; AC009326_12 (AC009326) unknown protein [Arabidopsis; E=0.84.
  
     0.589
RB11084
PMID: 9384377 best DB hits: BLAST: pir:F69688; response regulator aspartate phosphatase rapC - Bacillus; E=0.79.
  
     0.585
blaI
Probable Penicillinase repressor; PMID: 3096969 PMID: 3305074 PMID: 3260234 best DB hits: BLAST: swissprot:P06555; BLAI_BACLI PENICILLINASE REPRESSOR (REGULATORY; E=7e-10 pir:B28183; beta-lactamase repressor protein - Bacillus; E=8e-09 pir:S74550; hypothetical protein slr0240 - Synechocystis sp. (strain; E=2e-05 PFAM: PF00392; Bacterial regulatory proteins, gntR; E=0.082.
  
     0.577
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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