Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pepQBest DB hits: BLAST: gb:AAG19595.1; (AE005049) X-pro aminopeptidase homolog; PepQ2; E=1e-43 gb:AAB89220.1; (AE000962) X-pro aminopeptidase (pepQ); E=3e-16 swissprot:Q10698; YK89_MYCTU PROBABLE DIPEPTIDASE RV2089C -----; E=4e-16 COG: VNG1233G; COG0006 Xaa-Pro aminopeptidase; E=1e-44 PFAM: PF00557; metallopeptidase family M24; E=0.3; Belongs to the peptidase M24B family. (404 aa)    
Predicted Functional Partners:
RB10587
Conserved hypothetical protein-putative phosphoesterase; Best DB hits: BLAST: pir:F75129; hypothetical protein PAB0562 - Pyrococcus abyssi (strain; E=4e-07 embl:CAC23276.1; (AL512965) hypothetical [Sulfolobus; E=1e-05 pir:A69108; probable phosphoesterase (EC 3.1.-.-) MTH1803 -; E=2e-04 COG: PAB0562; COG1407 Predicted ICC-like phosphoesterases; E=3e-08.
       0.773
RB10590
PMID: 10368134 best DB hits: BLAST: swissprot:P75920; MDOC_ECOLI GLUCANS BIOSYNTHESIS PROTEIN MDOC; E=2e-10 gb:AAG55793.1; AE005315_7 (AE005315) orf, hypothetical protein; E=2e-09 embl:CAB77037.1; (AJ245997) hypothetical protein [Xanthomonas; E=0.003 PFAM: PF00023; Ank repeat; E=1e-05.
   
   0.728
RB10589
Hypothetical protein.
       0.718
RB10583
Conserved hypothetical protein-putative containing TPR-repeat; Best DB hits: BLAST: pir:B70374; conserved hypothetical protein aq_854 - Aquifex aeolicus; E=1e-05 ddbj:BAA91540.1; (AK001182) unnamed protein product [Homo; E=0.12 embl:CAB98267.1; (AJ276171) ASPIC [Homo sapiens]; E=0.12 COG: aq_854; COG0457 TPR-repeat-containing proteins; E=1e-06 PFAM: PF00515; TPR Domain; E=0.059.
  
    0.517
korA
2-oxoglutarate ferredoxin oxidoreductase alpha subunit; PMID: 11401501 best DB hits: BLAST: embl:CAC08296.1; (AL392148) putative oxidoreductase [Streptomyces; E=1e-165 embl:CAB60189.1; (AL132824) putative oxidoreductase alpha-subunit; E=1e-164 pir:F70864; probable oxidoreductase alpha subunit - Mycobacterium; E=1e-160 COG: Rv2455c_2; COG0674 Pyruvate:ferredoxin oxidoreductase and related; E=1e-106 Rv2455c_1; COG1014 Pyruvate:ferredoxin oxidoreductase and related; E=2e-46 BH2374_2; COG0674 Pyruvate:ferredoxin oxidoreductase and related; E=2e-40 PFAM: PF01855; Pyruvate flavodoxin/ferredo [...]
     
 0.472
celM
Best DB hits: BLAST: pir:E75542; probable endoglucanase - Deinococcus radiodurans (strain; E=6e-48 gb:AAG19796.1; (AE005064) endoglucanase; CelM [Halobacterium sp; E=2e-47 pir:A69157; endo-1,4-beta-glucanase - Methanobacterium; E=8e-47 COG: DR0229; COG1363 Cellulase M and related proteins; E=6e-49.
 
  
 0.443
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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