STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10596Hypothetical protein-putative transmembrane protein. (379 aa)    
Predicted Functional Partners:
RB10593
Hypothetical protein.
       0.773
RB10595
Best DB hits: BLAST: pir:T49425; hypothetical protein B17C10.60 [imported] - Neurospora; E=0.0 embl:CAA87818.1; (Z47815) unknown [Saccharomyces cerevisiae]; E=0.0 embl:CAA96728.1; (Z72549) ORF YGL027c [Saccharomyces cerevisiae]; E=7e-06 PFAM: PF00452; Apoptosis regulator proteins, B; E=0.0068.
       0.773
arsB
Sulfatase 1 precursor; PMID: 20233298 best DB hits: BLAST: gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=8e-37 gb:AAF49287.1; (AE003522) CG7402 gene product [Drosophila; E=2e-29 gb:AAA51779.1; (M32373) arylsulfatase B precursor [Homo sapiens]; E=3e-29 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=6e-26 PFAM: PF00884; Sulfatase; E=2e-35.
       0.613
RB10601
Hypothetical protein.
       0.489
pyc
Pyruvate carboxylase; Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second.
       0.483
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.