STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10656Hypothetical protein. (88 aa)    
Predicted Functional Partners:
RB10657
Hypothetical protein.
       0.452
yahN
Best DB hits: BLAST: pir:H69818; conserved hypothetical protein yhaN - Bacillus subtilis; E=2e-07 ddbj:BAB05865.1; (AP001514) BH2146~unknown conserved protein; E=0.002 pir:S56387; hypothetical protein f1107 - Escherichia coli -----; E=0.004 COG: BH2146; COG1511 Predicted membrane protein; E=2e-04 yjeP; COG3264 Small-conductance mechanosensitive channel; E=4e-04 PFAM: PF00005; ABC transporter; E=0.1.
       0.452
RB10663
Best DB hits: BLAST: pir:A69819; probable phosphoesterase (EC 3.1.-.-) yhaO - Bacillus; E=3e-31 pir:E75103; DNA repair protein rad32 (rad32) PAB0811 - Pyrococcus; E=6e-07 gb:AAG60901.1; AF322013_20 (AF322013) ID473 [Bradyrhizobium; E=1e-05 COG: BS_yhaO; COG0420 DNA repair exonuclease; E=3e-32 PFAM: PF02549; DNA repair exonuclease; E=5.9e-18.
       0.452
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.