Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10665Hypothetical protein; Best DB hits: BLAST: ddbj:BAB03764.1; (AP001507) signal peptidase-like protein; E=0.87. (200 aa)    
Predicted Functional Partners:
RB3479
Hypothetical protein-putative general secretory pathway protein; PMID: 11254562 best DB hits: PFAM: PF00263; Bacterial type II and III secretion; E=0.021.
  
     0.758
RB6127
Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF01842; ACT domain; E=0.55 PF00515; TPR Domain; E=0.051.
  
     0.740
RB8077
Hypothetical protein-signal peptide and transmembrane prediction.
  
 
   0.717
RB2247
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG19229.1; (AE005019) Vng0754c [Halobacterium sp. NRC-1]; E=9e-06 gb:AAF75279.1; AF265353_1 (AF265353) byssal protein Dpfp1; E=0.21 ddbj:BAA94345.1; (AB035520) parchorin [Oryctolagus cuniculus]; E=0.50 PFAM: PF00089; Trypsin; E=0.58.
  
     0.716
RB9330
Probable fibrinogen-binding protein homolog-putative involved in cell-cell interaction; PMID: 99098700 PMID: 98261511 best DB hits: BLAST: pir:T28679; fibrinogen-binding protein homolog - Staphylococcus aureus; E=9e-46 gb:AAF72509.1; AF245041_1 (AF245041) putative cell-surface adhesin; E=1e-37 embl:CAB75732.1; (Y18653) bone sialoprotein-binding protein; E=6e-24.
  
     0.702
RB8928
Conserved hypothetical protein-putative 1-acyl-sn-glycerol-3-phosphate acyltransferase; Best DB hits: BLAST: pir:S74905; hypothetical protein slr2060 - Synechocystis sp. (strain; E=4e-10 ddbj:BAB05354.1; (AP001512) BH1635~unknown conserved protein; E=0.004 gb:AAF73599.1; (AE002342) 1-acyl-sn-glycerol-3-phosphate; E=0.004 COG: BH1635; COG0204 1-acyl-sn-glycerol-3-phosphate acyltransferase; E=4e-04 PFAM: PF01553; Acyltransferase; E=2.7e-09.
  
    0.687
RB6233
Hypothetical protein.
  
     0.684
RB10641
Probable beta-subunit of geranylgeranyltransferase or farnesyltransferase; Best DB hits: BLAST: ddbj:BAB10039.1; (AB007727) Rab geranylgeranyltransferase, beta; E=5e-05 swissprot:P41992; PFTB_CAEEL PROBABLE PROTEIN FARNESYLTRANSFERASE; E=7e-05 swissprot:Q04903; PFTB_PEA PROTEIN FARNESYLTRANSFERASE BETA; E=0.005 PFAM: PF00432; Prenyltransferase and squalene ox; E=1.4e-08.
  
     0.668
RB1954
Best DB hits: BLAST: pir:T30283; polyketide synthase - Streptomyces sp. (strain MA6548); E=0.11 gb:AAF86396.1; AF235504_17 (AF235504) FkbA [Streptomyces; E=0.11 pir:T30228; polyketide synthase - Streptomyces hygroscopicus -----; E=0.12.
 
     0.666
RB5205
Probable peptidyl-prolyl cis-trans isomerase; PMID: 2186809 best DB hits: BLAST: ddbj:BAB04896.1; (AP001511) protein secretion (post-translocation; E=2e-08 pir:E71662; protein export protein prsa precursor (prsA) RP576 -; E=3e-05 pir:A83421; peptidyl-prolyl cis-trans isomerase D PA1805 [imported]; E=4e-05 COG: BH1177; COG0760 Parvulin-like peptidyl-prolyl isomerase; E=2e-09 PFAM: PF00639; PPIC-type PPIASE domain; E=2.4e-08.
 
     0.666
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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