Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10675Hypothetical protein-putative transmembrane protein. (779 aa)    
Predicted Functional Partners:
RB10678
Hypothetical protein.
       0.572
RB10670
Conserved hypothetical protein-putative hydrolase of the alkaline phosphatase superfamily; Best DB hits: BLAST: pir:B83531; hypothetical protein PA0924 [imported] - Pseudomonas; E=1e-12 pir:D82055; conserved hypothetical protein VC2600 [imported] -; E=7e-06 gb:AAK03767.1; (AE006205) unknown [Pasteurella multocida]; E=0.12 COG: PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=1e-13.
       0.545
RB10672
Hypothetical protein.
       0.545
RB10673
Conserved hypothetical protein-putative transmembrane protein; Best DB hits: BLAST: pir:S22614; hypothetical protein - Salmonella choleraesuis -----; E=9e-25.
       0.545
RB10674
Hypothetical protein.
       0.545
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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