STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10690Best DB hits: BLAST: pir:T34936; hypothetical protein SC3F9.14 SC3F9.14 - Streptomyces; E=3e-83 pir:T36185; hypothetical protein SCE29.06c - Streptomyces coelicolor; E=2e-73 pir:B82537; phosphodiesterase-nucleotide pyrophosphatase precursor; E=0.094 COG: XF2599; COG1524 Uncharacterized proteins of the AP superfamily; E=0.009 PFAM: PF01663; Type I phosphodiesterase / nucle; E=0.18. (429 aa)    
Predicted Functional Partners:
RB1044
Conserved hypothetical protein-putative metal-dependent hydrolases; Best DB hits: BLAST: pir:T36187; hypothetical protein SCE29.08c - Streptomyces coelicolor; E=6e-52 pir:T34934; hypothetical protein SC3F9.12 SC3F9.12 - Streptomyces; E=9e-47 swissprot:Q58778; YD83_METJA HYPOTHETICAL PROTEIN MJ1383 PRECURSOR; E=7e-19 COG: MJ1383; COG1099 Predicted metal-dependent hydrolases with the; E=6e-20.
 
   
 0.795
RB538
Best DB hits: BLAST: pir:T34935; hypothetical protein SC3F9.13 SC3F9.13 - Streptomyces; E=2e-43 pir:T36186; hypothetical protein SCE29.07c - Streptomyces coelicolor; E=2e-37.
 
   
 0.794
RB12713
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11759840 best DB hits: PFAM: PF01040; UbiA prenyltransferase family; E=2.4e-11.
 
     0.784
aroB-2
3-dehydroquinate synthase; PMID: 10910347 best DB hits: BLAST: pir:C82693; 3-dehydroquinate synthase XF1334 [imported] - Xylella; E=7e-24 swissprot:P34002; AROB_PSEAE 3-DEHYDROQUINATE SYNTHASE -----; E=1e-21 ddbj:BAB10417.1; (AB011474) 3-dehydroquinate synthase-like; E=6e-21 COG: XF1334; COG0337 3-dehydroquinate synthetase; E=6e-25 PFAM: PF01761; 3-dehydroquinate synthase; E=2.9e-29.
 
     0.771
RB4008
Best DB hits: BLAST: embl:CAB45032.1; (AL078635) putative large multi-functional protein; E=1e-22 pir:T36423; probable large, multifunctional secreted protein -; E=4e-18 PFAM: PF00034; Cytochrome c; E=0.24 PF01436; NHL repeat; E=0.25.
  
     0.708
RB24
Best DB hits: BLAST: pir:F75417; L-sorbosone dehydrogenase - Deinococcus radiodurans; E=0.13 embl:CAB94635.1; (AL359215) putative secreted glycosyl hydrolase; E=0.26 PFAM: PF00034; Cytochrome c; E=0.35.
  
     0.669
RB3951
Putative large multi-functional protein; Best DB hits: BLAST: pir:T36423; probable large, multifunctional secreted protein -; E=1e-59 embl:CAB45032.1; (AL078635) putative large multi-functional; E=4e-53.
  
     0.668
RB9438
Best DB hits: BLAST: pir:T36423; probable large, multifunctional secreted protein -; E=4e-50 embl:CAB45032.1; (AL078635) putative large multi-functional; E=6e-45.
  
     0.662
RB8892
Best DB hits: BLAST: pir:A83363; probable cytochrome c precursor PA2266 [imported] -; E=6e-09 pir:B81167; cytochrome c552 NMB0717 precursor [similarity] - Neisseria; E=7e-09 pir:F83631; cytochrome c oxidase, subunit II PA0105 [imported] -; E=2e-08 COG: PA2266; COG2010 Cytochrome c, mono- and diheme variants; E=6e-10.
 
     0.642
gdhP
Similar to glucose dehydrogenase-B [pyrroloquinoline-quinone] [Precursor]; PMID: 2671663 best DB hits: BLAST: swissprot:P13650; DHGB_ACICA GLUCOSE DEHYDROGENASE-B; E=0.12 pdb:1CRU; B Chain B, Soluble Quinoprotein Glucose Dehydrogenase; E=0.12 pir:C69050; phycocyanin alpha phycocyanobilin lyase CpcE -; E=0.19.
  
     0.639
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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