Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
dagAPutative Na(+)-linked D-alanine glycine permease; PMID: 1447975 best DB hits: BLAST: embl:CAC01597.1; (AL391041) putative amino acid transport; E=1e-90 gb:AAF12563.1; AE001826_32 (AE001826) Na(+)-linked D-alanine; E=5e-81 ddbj:BAB07752.1; (AP001520) amino acid transporter [Bacillus; E=4e-46 COG: DRB0133; COG1115 Na+/alanine symporter; E=4e-82 PFAM: PF02497; Arterivirus glycoprotein; E=0.45 PF00746; Gram positive anchor; E=0.031 PF01235; Sodium:alanine symporter fami; E=5.2e-96. (565 aa)    
Predicted Functional Partners:
RB2982
Putative chloride channel; PMID: 9389475 best DB hits: BLAST: gb:AAB89832.1; (AE001006) chloride channel, putative; E=3e-82 embl:CAC12582.1; (AL445067) chloride channel (CLC-3) related; E=2e-49 pir:B70617; hypothetical protein Rv0143c - Mycobacterium; E=1e-33 COG: AF1415_1; COG0038 Chloride channel protein EriC; E=7e-68 aq_438_2; COG0517 CBS domains; E=6e-09 sll0855; COG0038 Chloride channel protein EriC; E=1e-08 PFAM: PF00654; Voltage gated chloride channe; E=1.8e-62 PF00571; CBS domain; E=1.7e-06.
   
    0.538
RB10690
Best DB hits: BLAST: pir:T34936; hypothetical protein SC3F9.14 SC3F9.14 - Streptomyces; E=3e-83 pir:T36185; hypothetical protein SCE29.06c - Streptomyces coelicolor; E=2e-73 pir:B82537; phosphodiesterase-nucleotide pyrophosphatase precursor; E=0.094 COG: XF2599; COG1524 Uncharacterized proteins of the AP superfamily; E=0.009 PFAM: PF01663; Type I phosphodiesterase / nucle; E=0.18.
       0.522
RB10140
Best DB hits: BLAST: pir:B82127; sulfate permease family protein VC2031 [imported] -; E=1e-89 pir:G83325; probable sulfate transporter PA2563 [imported] -; E=5e-53 ddbj:BAB04133.1; (AP001508) sulfate permease [Bacillus; E=1e-51 COG: VC2031; COG0659 Sulfate permease and related transporters (MFS; E=1e-90 PFAM: PF00916; Sulfate transporter family; E=9.5e-12 PF00955; HCO3- transporter family; E=0.86 PF00916; Sulfate transporter family; E=4.5e-54.
  
     0.478
RB3236
Probable transporter; PMID: 9923682 PMID: 7890707 best DB hits: BLAST: pir:E71961; probable transporter - Helicobacter pylori (strain J99); E=2e-51 pir:F64546; sodium-dependent transporter - Helicobacter pylori; E=8e-51 ddbj:BAA96091.1; (AB043024) sodium sulfate or dicarboxylate; E=1e-45 COG: jhp0200; COG0471 Di- and tricarboxylate transporters; E=2e-52 PAB1107; COG1055 Na+/H+ antiporter NhaD and related arsenite; E=0.001 sll0640; COG0471 Di- and tricarboxylate transporters; E=0.006 PFAM: PF00939; Sodium:sulfate symporter transm; E=1.6e-12.
  
    0.450
RB10689
Hypothetical protein.
       0.432
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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