Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
RB10698Hypothetical protein. (150 aa)    
Predicted Functional Partners:
tolQ
Probable TolQ; PMID: 8921895 best DB hits: BLAST: gb:AAK03054.1; (AE006136) TolQ [Pasteurella multocida]; E=3e-10 swissprot:P43768; TOLQ_HAEIN TOLQ PROTEIN ----- pir: I64064; E=7e-09 pir:PC4258; tolQ protein - Haemophilus influenzae (fragment) -----; E=2e-08 COG: HI0385; COG0811 Biopolymer transport proteins; E=7e-10 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=1.4e-18.
       0.553
RB10702
Similar to biopolymer transport exbD2 protein; PMID: 9781885 best DB hits: BLAST: pir:E82726; conserved hypothetical protein XF1080 [imported] -; E=0.007 swissprot:Q9ZHV9; EXD2_VIBCH BIOPOLYMER TRANSPORT EXBD2 PROTEIN; E=0.043 pir:B82858; biopolymer transport ExbD1 protein XF0011 [imported] -; E=0.16 COG: XF1080; COG0848 Biopolymer transport protein; E=7e-04 PFAM: PF02472; Biopolymer transport protein ExbD/To; E=5.3e-06.
       0.553
exbD
Probable biopolymer transport exbD protein; PMID: 9140974 best DB hits: BLAST: embl:CAB50919.1; (AJ243354) hypothetical protein [Pseudomonas; E=4e-05 pir:F83274; conserved hypothetical protein PA2982 [imported] -; E=7e-05 swissprot:O06434; EXBD_NEIGO BIOPOLYMER TRANSPORT EXBD PROTEIN; E=0.001 COG: PA2982; COG0848 Biopolymer transport protein; E=7e-06 PFAM: PF02472; Biopolymer transport protein ExbD/; E=8.9e-08.
       0.415
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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