Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10709Best DB hits: BLAST: ddbj:BAA15142.1; (D90789) Periplasmic dipeptide transport protein; E=0.15 swissprot:P76128; YDDS_ECOLI PUTATIVE BINDING PROTEIN YDDS; E=0.15 gb:AAG56282.1; AE005357_2 (AE005357) putative hemin-binding; E=0.15. (793 aa)    
Predicted Functional Partners:
oppB
Oligopeptide transport system permease protein OppB; PMID: 1738314 PMID: 2187863 best DB hits: BLAST: ddbj:BAA14776.1; (D90763) Oligopeptide transport system permease; E=8e-56 swissprot:P31132; OPPB_ECOLI OLIGOPEPTIDE TRANSPORT SYSTEM; E=1e-55 pir:B38447; oligopeptide permease oppB homolog - Bacillus subtilis; E=2e-55 COG: oppB; COG0601 ABC-type dipeptide/oligopeptide/nickel transport; E=1e-56 PFAM: PF00528; Binding-protein-dependent transpor; E=0.00032.
  
 
 0.950
oppC
PMID: 1738314 PMID: 1901616 best DB hits: BLAST: pir:D82242; oligopeptide ABC transporter, permease protein VC1093; E=4e-50 swissprot:P45053; OPPC_HAEIN OLIGOPEPTIDE TRANSPORT SYSTEM; E=1e-46 pir:D70141; oligopeptide ABC transporter, permease protein (oppC-1); E=5e-46 COG: VC1093; COG1173 ABC-type dipeptide/oligopeptide/nickel transport; E=4e-51 PFAM: PF00528; Binding-protein-dependent transpor; E=9.1e-10.
  
 
 0.949
korA
2-oxoglutarate ferredoxin oxidoreductase alpha subunit; PMID: 11401501 best DB hits: BLAST: embl:CAC08296.1; (AL392148) putative oxidoreductase [Streptomyces; E=1e-165 embl:CAB60189.1; (AL132824) putative oxidoreductase alpha-subunit; E=1e-164 pir:F70864; probable oxidoreductase alpha subunit - Mycobacterium; E=1e-160 COG: Rv2455c_2; COG0674 Pyruvate:ferredoxin oxidoreductase and related; E=1e-106 Rv2455c_1; COG1014 Pyruvate:ferredoxin oxidoreductase and related; E=2e-46 BH2374_2; COG0674 Pyruvate:ferredoxin oxidoreductase and related; E=2e-40 PFAM: PF01855; Pyruvate flavodoxin/ferredo [...]
  
    0.819
RB10706
Similar to serine/threonine protein kinase related protein-putative PQQ-dependent oxidoreductase; Best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=0.045 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=0.004 PFAM: PF01011; PQQ enzyme repeat; E=0.009.
       0.809
RB10710
Hypothetical protein-signal peptide prediction.
       0.805
oppF
Oligopeptide transport ATP-binding protein OppF; PMID: 1738314 PMID: 9097039 best DB hits: BLAST: embl:CAC05751.1; (AL391751) putative peptide transport system; E=6e-96 ddbj:BAB07364.1; (AP001519) oligopeptide ABC transporter; E=1e-92 pir:B72424; oligopeptide ABC transporter, ATP-binding protein -; E=3e-90 COG: BH3645; COG1124 ABC-type dipeptide/oligopeptide/nickel transport; E=1e-93 VNG2526G; COG1123 ATPase components of uncharacterized ABC-type; E=3e-84 BH0027; COG1124 ABC-type dipeptide/oligopeptide/nickel transport; E=3e-84 PFAM: PF00485; Phosphoribulokinase / Uridine; E=0.17 PF000 [...]
  
 
 0.750
oppD
Oligopeptide transport ATP-binding protein OppD; PMID: 1738314 PMID: 1901616 best DB hits: BLAST: gb:AAG22037.1; AF305387_4 (AF305387) OppD [Bacillus thuringiensis]; E=2e-95 pir:H75380; peptide ABC transporter, ATP-binding protein -; E=8e-93 gb:AAA62691.1; (M57689) sporulation protein [Bacillus subtilis]; E=1e-92 COG: DR1568; COG0444 ABC-type dipeptide/oligopeptide/nickel transport; E=7e-94 Rv1281c; COG1123 ATPase components of uncharacterized ABC-type; E=5e-80 TM1064; COG0444 ABC-type dipeptide/oligopeptide/nickel transport; E=1e-78 PFAM: PF01580; FtsK/SpoIIIE family; E=0.62 PF00005; [...]
  
 
 0.655
exbD
Probable biopolymer transport exbD protein; PMID: 9140974 best DB hits: BLAST: embl:CAB50919.1; (AJ243354) hypothetical protein [Pseudomonas; E=4e-05 pir:F83274; conserved hypothetical protein PA2982 [imported] -; E=7e-05 swissprot:O06434; EXBD_NEIGO BIOPOLYMER TRANSPORT EXBD PROTEIN; E=0.001 COG: PA2982; COG0848 Biopolymer transport protein; E=7e-06 PFAM: PF02472; Biopolymer transport protein ExbD/; E=8.9e-08.
       0.588
RB10702
Similar to biopolymer transport exbD2 protein; PMID: 9781885 best DB hits: BLAST: pir:E82726; conserved hypothetical protein XF1080 [imported] -; E=0.007 swissprot:Q9ZHV9; EXD2_VIBCH BIOPOLYMER TRANSPORT EXBD2 PROTEIN; E=0.043 pir:B82858; biopolymer transport ExbD1 protein XF0011 [imported] -; E=0.16 COG: XF1080; COG0848 Biopolymer transport protein; E=7e-04 PFAM: PF02472; Biopolymer transport protein ExbD/To; E=5.3e-06.
       0.478
tolQ
Probable TolQ; PMID: 8921895 best DB hits: BLAST: gb:AAK03054.1; (AE006136) TolQ [Pasteurella multocida]; E=3e-10 swissprot:P43768; TOLQ_HAEIN TOLQ PROTEIN ----- pir: I64064; E=7e-09 pir:PC4258; tolQ protein - Haemophilus influenzae (fragment) -----; E=2e-08 COG: HI0385; COG0811 Biopolymer transport proteins; E=7e-10 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=1.4e-18.
       0.474
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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