Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10797Best DB hits: BLAST: pir:A71552; probable lysophospholipase esterase - Chlamydia; E=4e-08 pir:F81704; serine esterase, probable TC0413 [imported] - Chlamydia; E=6e-08 pir:D72098; serine esterase, probable CP0488 [imported] -; E=1e-06 COG: CT136; COG0400 Predicted esterase; E=4e-09 PFAM: PF02230; Phospholipase/Carboxylesterase; E=0.68. (271 aa)    
Predicted Functional Partners:
RB10799
Hypothetical protein-putative transmembrane protein.
       0.773
RB10801
Conserved hypothetical protein-putative transmembrane protein; Best DB hits: BLAST: embl:CAB37418.1; (AJ224978) ORF 245 [Salmonella typhimurium]; E=0.002 gb:AAG31761.1; (AF282268) unknown [Salmonella enterica serovar; E=0.23.
       0.773
estB
Probable esterase; PMID: 8190066 best DB hits: BLAST: pir:S43880; esterase - Spirulina platensis ----- gb:; E=2e-09 pir:S75304; serine esterase - Synechocystis sp. (strain PCC 6803); E=1e-06 pir:F81704; serine esterase, probable TC0413 [imported] - Chlamydia; E=0.002 COG: sll1284; COG0400 Predicted esterase; E=1e-07 PFAM: PF02230; Phospholipase/Carboxylesterase; E=0.27.
  
     0.696
RB2038
Best DB hits: BLAST: pir:T26963; hypothetical protein ZK1151.2a - Caenorhabditis elegans; E=0.089 pir:T26964; hypothetical protein ZK1151.2b - Caenorhabditis elegans; E=0.089 ddbj:BAA96036.1; (AB040945) KIAA1512 protein [Homo sapiens]; E=0.50 PFAM: PF00817; impB/mucB/samB family; E=0.24.
  
     0.648
RB10346
Similar to N,N-dimethyltransferase; Best DB hits: BLAST: gb:AAK04327.1; AE006260_10 (AE006260) HYPOTHETICAL PROTEIN; E=0.003 gb:AAC68678.1; (AF079762) N,N-dimethyltransferase [Streptomyces; E=0.052 pir:G75136; menaquinone biosynthesis methlytransferase related; E=0.13.
  
     0.647
RB10805
Putative iron alcohol dehydrogenase; PMID: 88038383 best DB hits: BLAST: swissprot:Q09669; ADHF_SCHPO PUTATIVE IRON ALCOHOL DEHYDROGENASE; E=5e-46 gb:AAD43989.1; U59485_16 (U59485) AttL [Agrobacterium tumefaciens]; E=5e-45 gb:AAG58733.1; AE005585_7 (AE005585) putative oxidoreductase; E=6e-42 COG: yiaY; COG1454 Alcohol dehydrogenase IV; E=3e-42 PFAM: PF00465; Iron-containing alcohol dehydrogenas; E=3.3e-58.
       0.569
RB10806
Hypothetical protein.
       0.558
RB8677
Best DB hits: BLAST: pir:S76850; hypothetical protein - Synechocystis sp. (strain PCC; E=0.56.
  
     0.468
RB2530
Conserved hypothetical protein-putative oxidoreductase; Best DB hits: BLAST: gb:AAG19823.1; (AE005067) Vng1537c [Halobacterium sp. NRC-1]; E=4e-27 pir:E75148; hypothetical protein PAB2116 - Pyrococcus abyssi (strain; E=9e-25 gb:AAG20566.1; (AE005127) Vng2502c [Halobacterium sp. NRC-1]; E=8e-24 COG: VNG1537C; COG1078 HD superfamily phosphohydrolases; E=4e-28.
  
     0.464
RB10793
Best DB hits: BLAST: pir:C83055; probable two-component response regulator PA4726; E=2e-58 gb:AAG59807.1; AF305914_2 (AF305914) HydG [Klebsiella oxytoca]; E=2e-58 pir:T08624; probable NtrC-type response regulator - Eubacterium; E=3e-58 COG: PA4726; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-59 PA2359; COG1221 NtrC family transcriptional regulators, ATPase; E=2e-58 VC1926; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-57 PFAM: PF01590; GAF domain; E=1.1e-13 PF00158; Sigma-54 interaction domain; E=1e-128.
       0.455
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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