STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10886Hypothetical protein-transmembrane region and signal peptide prediction. (135 aa)    
Predicted Functional Partners:
RB10884
Hypothetical protein-transmembrane prediction.
       0.806
RB10887
Carbamyltransferase BlmD; PMID: 9163424 best DB hits: BLAST: swissprot:P74178; YB78_SYNY3 HYPOTHETICAL 69.1 KD PROTEIN SLL1178; E=1e-175 gb:AAK00162.1; AF222753_17 (AF222753) nodulation protein NolO; E=8e-78 swissprot:P55474; NOLO_RHISN NODULATION PROTEIN NOLNO -----; E=1e-76 COG: sll1178; COG2192 Predicted carbamoyl transferase, NodU family; E=1e-176 PFAM: PF02543; Carbamoyltransferase; E=4.4e-130.
       0.800
RB10890
Hypothetical protein-transmembrane prediction.
       0.767
RB10891
Hypothetical protein.
       0.568
RB10892
Putative ammonium transporter; PMID: 8590279 best DB hits: BLAST: swissprot:P54148; Y537_SYNY3 PUTATIVE AMMONIUM TRANSPORTER SLL0537; E=9e-88 swissprot:P54147; Y108_SYNY3 PUTATIVE AMMONIUM TRANSPORTER SLL0108; E=1e-70 gb:AAB89503.1; (AE000982) ammonium transporter (amt-2); E=2e-66 COG: sll0537; COG0004 Ammonia permeases; E=8e-89 VC1084; COG0642 Sensory transduction histidine kinases; E=2e-33 MTH661; COG0004 Ammonia permeases; E=1e-32 PFAM: PF00909; Ammonium Transporter Family; E=1.9e-133 PF00512; His Kinase A (phosphoacceptor; E=6.1e-05 PF02518; Histidine kinase-, DNA gyrase; E=3.7e-25.
       0.514
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.