Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RB10920Hypothetical protein. (286 aa)    
Predicted Functional Partners:
RB10921
Putative transcriptional regulatory protein Y4PA; PMID: 9163424 best DB hits: BLAST: swissprot:P55607; Y4OV_RHISN HYPOTHETICAL 30.2 KD PROTEIN Y4OV; E=8e-81 ddbj:BAB10918.1; (AB013389) gene_id:K1F13.7~similar to unknown; E=6e-75 gb:AAG60875.1; AF322012_180 (AF322013) ID407 [Bradyrhizobium; E=2e-29 PFAM: PF01884; PcrB family; E=0.34.
       0.541
RB10922
Conserved hypothetical protein; Best DB hits: BLAST: swissprot:P55606; Y4OU_RHISN HYPOTHETICAL PROTEIN Y4OU PRECURSOR; E=3e-85 ddbj:BAB10918.1; (AB013389) gene_id:K1F13.7~similar to unknown; E=1e-80.
       0.503
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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