Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10934Best DB hits: BLAST: pir:F83054; conserved hypothetical protein PA4738 [imported] -; E=1e-05 swissprot:P32691; YJBJ_ECOLI PROTEIN YJBJ ----- pir: D65212; E=2e-05 embl:CAB98302.2; (AL390114) probable 8.3 Kd protein in dinf-qor; E=0.032 COG: PA4738; COG3237 Uncharacterized BCR; E=1e-06; Belongs to the UPF0337 (CsbD) family. (68 aa)    
Predicted Functional Partners:
RB10936
Hypothetical protein.
       0.773
RB5304
Conserved hypothetical protein; PMID: 10910347 best DB hits: BLAST: pir:C82791; conserved hypothetical protein XF0565 [imported] -; E=2e-39 pir:F72345; ray-related protein - Thermotoga maritima (strain MSB8); E=3e-20 ddbj:BAB15493.1; (AK026507) unnamed protein product [Homo; E=6e-19 COG: XF0565; COG2930 Uncharacterized ACR; E=2e-40 PFAM: PF02590; Uncharacterized ACR, COG1576; E=0.0018.
  
    0.687
RB4459
Conserved hypothetical protein; PMID: 98344137 best DB hits: BLAST: swissprot:P11666; YGGB_ECOLI HYPOTHETICAL 30.9 KDA PROTEIN IN; E=5e-27 pir:D75011; hypothetical protein PAB1281 - Pyrococcus abyssi (strain; E=1e-22 pir:E71140; hypothetical protein PH0336 - Pyrococcus horikoshii; E=2e-22 COG: yggB; COG0668 Small-conductance mechanosensitive channel; E=5e-28 PA5022; COG3264 Small-conductance mechanosensitive channel; E=5e-13 PFAM: PF00924; Uncharacterized protein family; E=4.4e-52.
 
    0.626
osmY
Probable osmotically inducible protein Y; PMID: 1317380 best DB hits: BLAST: swissprot:P27291; OSMY_ECOLI OSMOTICALLY INDUCIBLE PROTEIN Y; E=4e-05 gb:AAG59556.1; AE005668_11 (AE005668) hyperosmotically inducible; E=8e-05 gb:AAD56642.1; AF178441_1 (AF178441) Smc22-1 [Sinorhizobium; E=2e-04 COG: osmY; COG2823 Predicted periplasmic or secreted lipoprotein; E=4e-06.
 
    0.624
RB10932
Hypothetical protein-transmembrane region and signal peptide prediction.
       0.580
RB4461
Conserved hypothetical protein; PMID: 9679194 best DB hits: BLAST: pir:H82702; small conductance mechanosensitive ion channel XF1258; E=2e-17 pir:E71140; hypothetical protein PH0336 - Pyrococcus horikoshii; E=1e-15 pir:B83096; conserved hypothetical protein PA4394 [imported] -; E=2e-15 COG: XF1258; COG0668 Small-conductance mechanosensitive channel; E=2e-18 HI0195.1; COG3264 Small-conductance mechanosensitive channel; E=1e-09 PFAM: PF00924; Uncharacterized protein family UPF00; E=6.2e-44.
 
    0.566
RB12965
Hypothetical protein-signal peptide prediction.
  
    0.479
RB8487
Hypothetical protein-signal peptide prediction.
  
    0.479
RB10929
Hypothetical protein.
       0.439
RB12323
Conserved hypothetical protein; PMID: 10567266 best DB hits: BLAST: pir:F75410; conserved hypothetical protein - Deinococcus radiodurans; E=0.084.
 
    0.436
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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