STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB10958Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF01226; Formate/nitrite transporter; E=0.8. (158 aa)    
Predicted Functional Partners:
RB10957
Best DB hits: BLAST: pir:F75258; hypothetical protein - Deinococcus radiodurans (strain; E=3e-16 pir:T35249; hypothetical protein SC5F2A.07 - Streptomyces coelicolor; E=4e-04.
       0.773
RB10956
Hypothetical protein.
     
 0.755
RB10960
Conserved hypothetical protein-putative transmembrane protein; Best DB hits: BLAST: pir:D75324; hypothetical protein - Deinococcus radiodurans (strain; E=7e-14 pir:C83546; hypothetical protein PA0806 [imported] - Pseudomonas; E=9e-11 embl:CAB92195.1; (AL356592) putative membrane protein; E=0.13.
       0.512
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.