Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RB10973Hypothetical protein. (37 aa)    
Predicted Functional Partners:
dltE
Best DB hits: BLAST: pir:H83564; probable short-chain dehydrogenase PA0658 [imported] -; E=1e-42 pir:E70761; probable ketoacyl reductase - Mycobacterium tuberculosis; E=8e-38 gb:AAK03000.1; (AE006130) unknown [Pasteurella multocida]; E=4e-34 COG: PA0658; COG0300 Short-chain dehydrogenases of various substrate; E=1e-43 Rv1050; COG1028 Dehydrogenases with different specificities (related; E=5e-23 YMR226c; COG0300 Short-chain dehydrogenases of various substrate; E=2e-22 PFAM: PF00106; short chain dehydrogenase; E=1.6e-45; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.773
RB10974
Hypothetical protein.
       0.564
RB10967
Putative oxidoreductase; Best DB hits: BLAST: embl:CAB62729.1; (AL133423) putative oxidoreductase [Streptomyces; E=1e-81 gb:AAG19273.1; (AE005023) quinone oxidoreductase; YfmJ; E=1e-77 pir:A69813; quinone oxidoreductase homolog yfmJ - Bacillus subtilis; E=6e-76 COG: VNG0815G; COG2130 Putative NADP-dependent oxidoreductases; E=1e-78 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=5e-10 Ta0841; COG1064 Zn-dependent alcohol dehydrogenases; E=2e-05 PFAM: PF00022; Actin; E=0.28 PF00107; Zinc-binding dehydrogenases; E=7.7e-37.
       0.561
gabD
Succinate-semialdehyde dehydrogenase [NADP+]; PMID: 8297211 best DB hits: BLAST: swissprot:O32507; GABD_DEIRA SUCCINATE-SEMIALDEHYDE DEHYDROGENASE; E=1e-118 gb:AAD19405.1; (AF102543) succinic semialdehyde dehydrogenase; E=1e-111 swissprot:Q55585; GABD_SYNY3 PROBABLE SUCCINATE-SEMIALDEHYDE; E=1e-107 COG: DRA0343; COG1012 NAD-dependent aldehyde dehydrogenases; E=1e-119 PFAM: PF00171; Aldehyde dehydrogenase family; E=2.7e-118; Belongs to the aldehyde dehydrogenase family.
       0.561
RB10966
Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: BLAST: ddbj:BAA95845.1; (AP002070) Similar to Arabidopsis thaliana low; E=0.053 gb:AAF26091.1; AC012393_17 (AC012393) low temperature and salt; E=0.069 gb:AAF26090.1; AC012393_16 (AC012393) low temperature and salt; E=0.088 PFAM: PF01679; Uncharacterized protein family UPF00; E=1.8e-13.
       0.416
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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