STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB10985Conserved hypothetical protein-putative phosphohydrolase of the HD superfamily; Best DB hits: BLAST: ddbj:BAB06554.1; (AP001516) BH2835~unknown conserved protein; E=5e-27 swissprot:P54168; YPGQ_BACSU HYPOTHETICAL 23.1 KD PROTEIN IN; E=7e-22 gb:AAK04163.1; AE006245_2 (AE006245) conserved hypothetical; E=6e-17 COG: BH2835; COG1418 Predicted HD superfamily hydrolase; E=5e-28 AF1423; COG1078 HD superfamily phosphohydrolases; E=0.002 PFAM: PF01966; HD domain; E=3.6e-12. (207 aa)    
Predicted Functional Partners:
RB10987
Conserved hypothetical protein-putative epimerase of the PhzC/PhzF family; Best DB hits: BLAST: ddbj:BAB04002.1; (AP001508) BH0283~unknown conserved protein; E=2e-62 pir:E83199; conserved hypothetical protein PA3578 [imported] -; E=3e-55 pir:A83301; hypothetical protein PA2770 [imported] - Pseudomonas; E=8e-52 COG: BH0283; COG0384 Predicted epimerase, PhzC/PhzF homolog; E=2e-63 PFAM: PF02567; Phenazine biosynthesis-like pro; E=1.5e-27 PF01678; Diaminopimelate epimerase; E=0.53.
       0.552
RB10989
Conserved hypothetical protein-putative acetyltransferase; PMID: 9835490 best DB hits: BLAST: embl:CAA08848.1; (AJ009820) hypothetical protein [Salmonella; E=2e-16 gb:AAG17708.1; AF282595_4 (AF282595) unknown [Klebsiella; E=2e-16 pir:S74655; hypothetical protein sll1671 - Synechocystis sp. (strain; E=2e-15 COG: sll1671; COG0454 Histone acetyltransferase HPA2 and related; E=2e-16 PFAM: PF00583; Acetyltransferase (GNAT) family; E=3.9e-17.
       0.487
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.