STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cftProbable cycloinulo-oligosaccharide fructanotransferase; PMID: 11157277 best DB hits: BLAST: gb:AAG47946.1; AF222787_1 (AF222787) cycloinulo-oligosaccharide; E=2e-04 pir:T35944; probable beta-galactosidase - Streptomyces coelicolor; E=5e-04 pir:T18266; cycloinulo-oligosaccharide fructanotransferase (EC; E=0.030 PFAM: PF02012; BNR repeat; E=0.23. (592 aa)    
Predicted Functional Partners:
RB11033
PMID: 8843436 best DB hits: BLAST: embl:CAB89462.1; (AL354048) putative ABC transporter integral; E=2e-16 embl:CAC09551.1; (AL442120) putative ABC transport system; E=2e-11 embl:CAB62838.1; (AL133443) hypothetical protein L5529.07; E=3e-04 COG: AF1017; COG0577 Predicted permease; E=3e-05 PFAM: PF02687; Predicted permease; E=2.3e-12.
  
     0.769
RB5421
PMID: 9406417 PMID: 11157277 best DB hits: BLAST: pir:T18266; cycloinulo-oligosaccharide fructanotransferase (EC; E=0.10 gb:AAG47946.1; AF222787_1 (AF222787) cycloinulo-oligosaccharide; E=0.22.
  
     0.768
RB3034
Hypothetical protein-signal peptide prediction.
  
     0.760
cycA
Probable cytochrome c precursor; PMID: 97428333 PMID: 2986626 PMID: 9281430 PMID: 11152119 best DB hits: BLAST: pir:A83363; probable cytochrome c precursor PA2266 [imported] -; E=5e-09 pir:E83075; probable cytochrome c PA4571 [imported] - Pseudomonas; E=7e-07 pir:CCTW5T; cytochrome c552 [validated] - Thermus aquaticus; E=9e-07 COG: PA2266; COG2010 Cytochrome c, mono- and diheme variants; E=5e-10 PFAM: PF00034; Cytochrome c; E=0.042.
  
     0.748
RB3036
Hypothetical protein.
  
     0.741
RB183
Conserved hypothetical protein-putative outer membrane protein; PMID: 12093901 best DB hits: BLAST: gb:AAD51069.1; AF175716_1 (AF175716) immunoreactive 52kD antigen; E=0.045 pir:S75812; hypothetical protein slr1270 - Synechocystis sp. (strain; E=0.17 PFAM: PF02321; Outer membrane efflux protein; E=0.18.
  
     0.740
RB5841
Best DB hits: BLAST: pir:T35944; probable beta-galactosidase - Streptomyces coelicolor; E=2e-04 pir:D83558; transport protein ExbB2 PA0693 [imported] - Pseudomonas; E=0.002 gb:AAA59483.1; (L34155) epiligrin alpha 3 subunit [Homo sapiens]; E=0.009 COG: sll0222; COG1409 Predicted phosphohydrolases; E=0.002.
  
     0.739
RB7685
Hypothetical protein; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038.
  
     0.729
RB5832
Hypothetical protein.
  
     0.719
RB6572
Hypothetical protein-signal peptide prediction.
  
     0.718
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.