Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RB11010Conserved hypothetical protein; PMID: 20365717 best DB hits: BLAST: pir:E82786; hypothetical protein XF0595 [imported] - Xylella; E=2e-63 pir:A81079; conserved hypothetical protein NMB1475 [imported] -; E=0.33 pir:A81864; probable NMA1686 [imported] - Neisseria meningitidis; E=0.79. (278 aa)    
Predicted Functional Partners:
RB11011
Conserved hypothetical protein; PMID: 20365717 best DB hits: BLAST: pir:F82786; conserved hypothetical protein XF0596 [imported] -; E=4e-45 pir:G75353; hypothetical protein - Deinococcus radiodurans (strain; E=3e-08.
 
  
 0.976
RB11013
Conserved hypothetical protein; PMID: 20365717 best DB hits: BLAST: pir:G82786; conserved hypothetical protein XF0597 [imported] -; E=2e-46 gb:AAG02156.1; AF212041_12 (AF212041) plasmolipin [Zymomonas; E=1e-20 pir:F75353; hypothetical protein - Deinococcus radiodurans (strain; E=1e-09 COG: XF0597; COG3295 Uncharacterized BCR; E=2e-47.
 
   
 0.946
piuB
Iron-uptake factor-putative FMN-dependent oxidoreductase; PMID: 8633080 best DB hits: BLAST: gb:AAC06216.1; (AF051690) iron-uptake factor [Pseudomonas; E=5e-17 pir:C83081; probable oxidoreductase PA4513 [imported] - Pseudomonas; E=5e-17 pir:B82329; sulfite reductase (NADPH) flavoprotein alpha-component; E=3e-10 COG: PA4513_2; COG0369 Sulfite reductase flavoprotein subunit; E=7e-17 VC0002; COG0716 Flavodoxins; E=2e-05 PFAM: PF00258; Flavodoxin; E=4.7e-29.
 
     0.924
RB11015
Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038.
       0.657
apbE
Thiamine biosynthesis lipoprotein apbE; PMID: 7542800 best DB hits: BLAST: pir:A82094; thiamin biosynthesis lipoprotein ApbE VC2289 [imported]; E=3e-61 swissprot:P44550; APBE_HAEIN THIAMINE BIOSYNTHESIS LIPOPROTEIN; E=8e-52 gb:AAK03418.1; (AE006171) ApbE [Pasteurella multocida]; E=4e-51 COG: VC2289; COG1477 Membrane-associated lipoprotein involved in thiamine; E=3e-62 NMB0563; COG1477 Membrane-associated lipoprotein involved in; E=2e-46 apbE; COG1477 Membrane-associated lipoprotein involved in thiamine; E=8e-45 PFAM: PF02424; ApbE family; E=6.5e-89.
 
    0.635
apbE-2
Probable thiamin biosynthesis lipoprotein apbE; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
    0.503
apbE-3
Probable thiamine biosynthesis lipoprotein apbE [Precursor]; Flavin transferase that catalyzes the transfer of the FMN moiety of FAD and its covalent binding to the hydroxyl group of a threonine residue in a target flavoprotein.
 
    0.478
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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