Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
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[Homology]
Score
RB11019Hypothetical protein. (77 aa)    
Predicted Functional Partners:
RB11016
Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038.
       0.773
RB11021
PMID: 8843436 best DB hits: BLAST: embl:CAC10293.1; (AL442629) putative ABC transport system ATP; E=3e-49 embl:CAB81857.1; (AL161691) putative ABC-transporter ATP-binding; E=6e-48 embl:CAB89461.1; (AL354048) putative ABC transporter ATP-binding; E=5e-47 COG: AF1469; COG1136 ABC-type (unclassified) transport system, ATPase; E=3e-47 PFAM: PF00485; Phosphoribulokinase / Uridine; E=0.21 PF00005; ABC transporter; E=2.1e-56.
       0.500
RB11015
Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038.
       0.453
RB11023
Hypothetical protein.
       0.431
RB11013
Conserved hypothetical protein; PMID: 20365717 best DB hits: BLAST: pir:G82786; conserved hypothetical protein XF0597 [imported] -; E=2e-46 gb:AAG02156.1; AF212041_12 (AF212041) plasmolipin [Zymomonas; E=1e-20 pir:F75353; hypothetical protein - Deinococcus radiodurans (strain; E=1e-09 COG: XF0597; COG3295 Uncharacterized BCR; E=2e-47.
       0.415
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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