STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11027Probable ABC transport system integral membrane protein; PMID: 8843436 best DB hits: BLAST: embl:CAC09551.1; (AL442120) putative ABC transport system; E=1e-06 pir:G70821; hypothetical protein Rv0987 - Mycobacterium tuberculosis; E=0.005 ddbj:BAB06840.1; (AP001517) BH3121~unknown conserved protein; E=0.011 COG: Rv0987_1; COG0577 Predicted permease; E=8e-04 PFAM: PF02687; Predicted permease; E=3.3e-13. (935 aa)    
Predicted Functional Partners:
RB11030
ABC transporter, ATP-binding protein; PMID: 9389475 best DB hits: BLAST: gb:AAB89781.1; (AE001001) ABC transporter, ATP-binding protein; E=2e-46 embl:CAB89461.1; (AL354048) putative ABC transporter ATP-binding; E=2e-45 embl:CAC10293.1; (AL442629) putative ABC transport system ATP; E=3e-45 COG: AF1469; COG1136 ABC-type (unclassified) transport system, ATPase; E=2e-47 PFAM: PF01580; FtsK/SpoIIIE family; E=0.7 PF00485; Phosphoribulokinase / Uridine ki; E=0.21 PF00005; ABC transporter; E=7.9e-61.
 
 
 0.996
macB
ABC transporter, ATP-binding protein; Non-canonical ABC transporter that contains transmembrane domains (TMD), which form a pore in the inner membrane, and an ATP- binding domain (NBD), which is responsible for energy generation. Confers resistance against macrolides.
 
 
 0.982
RB3729
ATP-binding subunit of ABC transporter; PMID: 9767151 best DB hits: BLAST: pir:A55541; heterocyst maturation protein devA - Anabaena sp; E=4e-54 embl:CAA05977.1; (AJ003195) ATP-binding subunit [Anabaena; E=1e-53 pir:S76632; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-49 COG: sll0484; COG1136 ABC-type (unclassified) transport system, ATPase; E=2e-50 PA2350; COG1135 Uncharacterized ABC-type transport system ATPase; E=6e-26 TM0352; COG1136 ABC-type (unclassified) transport system, ATPase; E=2e-25 PFAM: PF01583; Adenylylsulfate kinase; E=0.19 PF00005; ABC transporter; E=3.2e [...]
  
 
 0.977
RB11021
PMID: 8843436 best DB hits: BLAST: embl:CAC10293.1; (AL442629) putative ABC transport system ATP; E=3e-49 embl:CAB81857.1; (AL161691) putative ABC-transporter ATP-binding; E=6e-48 embl:CAB89461.1; (AL354048) putative ABC transporter ATP-binding; E=5e-47 COG: AF1469; COG1136 ABC-type (unclassified) transport system, ATPase; E=3e-47 PFAM: PF00485; Phosphoribulokinase / Uridine; E=0.21 PF00005; ABC transporter; E=2.1e-56.
 
 
 0.974
RB6982
ABC transporter, ATP-binding protein; PMID: 10952301 best DB hits: BLAST: swissprot:Q9WYI7; Y352_THEMA HYPOTHETICAL ABC TRANSPORTER; E=4e-61 pir:A82184; ABC transporter, ATP-binding protein VC1568 [imported] -; E=4e-59 ddbj:BAB07392.1; (AP001519) ABC transporter (ATP-binding protein); E=2e-57 COG: TM0352; COG1136 ABC-type (unclassified) transport system, ATPase; E=4e-62 PFAM: PF00485; Phosphoribulokinase / Uridine; E=0.53 PF00005; ABC transporter; E=3.1e-55.
 
 
 0.964
RB4309
ABC transporter, ATP-binding protein; PMID: 3288195 PMID: 3762695 best DB hits: BLAST: embl:CAA11724.1; (AJ223978) putative ABC transporter, YvrO; E=7e-48 gb:AAB89781.1; (AE001001) ABC transporter, ATP-binding protein; E=4e-47 embl:CAC21614.1; (AL512667) putative ABC transporter ATP-binding; E=6e-47 COG: AF1469; COG1136 ABC-type (unclassified) transport system, ATPase; E=4e-48 PFAM: PF00005; ABC transporter; E=1.7e-57.
 
 
 0.961
RB7232
Best DB hits: BLAST: pir:G69192; ABC transporter (glutamine transport ATP-binding; E=5e-39 pir:A82184; ABC transporter, ATP-binding protein VC1568 [imported] -; E=5e-38 pir:H72342; ABC transporter, ATP-binding protein - Thermotoga; E=6e-38 COG: MTH696; COG1136 ABC-type (unclassified) transport system, ATPase; E=5e-40 PFAM: PF00005; ABC transporter; E=6.5e-58.
 
 
 0.961
lolD-2
Lipoprotein releasing system ATP-binding protein LolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 
 0.960
lolD
Lipoprotein releasing system ATP-binding protein lolD; Part of the ABC transporter complex LolCDE involved in the translocation of mature outer membrane-directed lipoproteins, from the inner membrane to the periplasmic chaperone, LolA. Responsible for the formation of the LolA-lipoprotein complex in an ATP-dependent manner.
 
 
 0.959
RB4866
PMID: 10783239 best DB hits: BLAST: swissprot:P75957; LOLD_ECOLI LIPOPROTEIN RELEASING SYSTEM; E=6e-38 ddbj:BAA35937.1; (D90747) Heterocyst maturation protein (devA); E=6e-38 swissprot:O53899; Y986_MYCTU HYPOTHETICAL ABC TRANSPORTER; E=4e-37 COG: Rv0986; COG1136 ABC-type (unclassified) transport system, ATPase; E=4e-38 PA5503; COG1135 Uncharacterized ABC-type transport system ATPase; E=6e-33 PA4594; COG1136 ABC-type (unclassified) transport system, ATPase; E=8e-33 PFAM: PF00005; ABC transporter; E=9.9e-55.
  
 
 0.953
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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