Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11030ABC transporter, ATP-binding protein; PMID: 9389475 best DB hits: BLAST: gb:AAB89781.1; (AE001001) ABC transporter, ATP-binding protein; E=2e-46 embl:CAB89461.1; (AL354048) putative ABC transporter ATP-binding; E=2e-45 embl:CAC10293.1; (AL442629) putative ABC transport system ATP; E=3e-45 COG: AF1469; COG1136 ABC-type (unclassified) transport system, ATPase; E=2e-47 PFAM: PF01580; FtsK/SpoIIIE family; E=0.7 PF00485; Phosphoribulokinase / Uridine ki; E=0.21 PF00005; ABC transporter; E=7.9e-61. (251 aa)    
Predicted Functional Partners:
RB11027
Probable ABC transport system integral membrane protein; PMID: 8843436 best DB hits: BLAST: embl:CAC09551.1; (AL442120) putative ABC transport system; E=1e-06 pir:G70821; hypothetical protein Rv0987 - Mycobacterium tuberculosis; E=0.005 ddbj:BAB06840.1; (AP001517) BH3121~unknown conserved protein; E=0.011 COG: Rv0987_1; COG0577 Predicted permease; E=8e-04 PFAM: PF02687; Predicted permease; E=3.3e-13.
 
 
 0.991
RB11033
PMID: 8843436 best DB hits: BLAST: embl:CAB89462.1; (AL354048) putative ABC transporter integral; E=2e-16 embl:CAC09551.1; (AL442120) putative ABC transport system; E=2e-11 embl:CAB62838.1; (AL133443) hypothetical protein L5529.07; E=3e-04 COG: AF1017; COG0577 Predicted permease; E=3e-05 PFAM: PF02687; Predicted permease; E=2.3e-12.
 
 
 0.970
RB6983
Probable ATP-binding/permease fusion ABC transporter; PMID: 10984043 best DB hits: BLAST: pir:S76946; hypothetical protein - Synechocystis sp. (strain PCC; E=2e-34 swissprot:O31712; YKNZ_BACSU HYPOTHETICAL 42.1 KDA PROTEIN IN; E=9e-33 pir:G72385; conserved hypothetical protein - Thermotoga maritima; E=4e-30 COG: slr0594; COG0577 Predicted permease; E=2e-35 PFAM: PF02780; Transketolase, C-terminal dom; E=0.67 PF02687; Predicted permease; E=1.8e-34.
 
   0.959
RB7074
Conserved hypothetical protein-putative permease of ABC transporter; PMID: 9371463 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=0.003 gb:AAG18647.1; (AE004970) Vng0003c [Halobacterium sp. NRC-1]; E=0.015 embl:CAB89462.1; (AL354048) putative ABC transporter integral; E=0.024 COG: MTH695; COG0577 Predicted permease; E=3e-04 PFAM: PF01890; CbiG; E=0.096 PF02687; Predicted permease; E=5.7e-06 PF00951; Arterivirus GL envelope glycop; E=0.081.
  
 
 0.891
RB6502
PMID: 9371463 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=2e-30 swissprot:Q58902; YF07_METJA HYPOTHETICAL PROTEIN MJ1507 -----; E=5e-10 gb:AAB89778.1; (AE001001) conserved hypothetical protein; E=2e-09 COG: MTH695; COG0577 Predicted permease; E=2e-31 PFAM: PF02687; Predicted permease; E=4.3e-26.
  
   0.745
RB8693
Best DB hits: BLAST: gb:AAF81232.1; (AF263012) ABC transporter ATP binding protein; E=4e-31 pir:C72303; ABC transporter, ATP-binding protein - Thermotoga; E=5e-29 pir:T36523; probable ABC-type transport system ATP-binding protein -; E=1e-28 COG: TM1028; COG1131 ABC-type multidrug transport system, ATPase; E=5e-30 PFAM: PF00005; ABC transporter; E=4.5e-39.
  
     0.741
pstB
Probable phosphate transport ATP-binding protein PSTB; Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
  
0.697
nrtC
Nitrate transport ATP-binding protein; PMID: 9495773 PMID: 8437564 best DB hits: BLAST: swissprot:P73450; NRTC_SYNY3 NITRATE TRANSPORT ATP-BINDING PROTEIN; E=3e-61 gb:AAB86900.1; (L27431) nitrate transporter component; NasF; E=2e-51 pir:S75959; nitrate transport protein C-1 - Synechocystis sp; E=6e-49 COG: sll1452_2; COG0715 ABC-type nitrate/sulfonate/taurine/bicarbonate; E=3e-62.
 
      0.675
pheS
phenylalanyl-tRNA synthetase alpha chain; PMID: 6317865 best DB hits: BLAST: embl:CAA23564.1; (V00291) phenylalanyl-tRNA synthetase; E=6e-76 gb:AAA51469.1; (K02844) phenylalanyl-tRNA synthetase; E=6e-76 swissprot:P08312; SYFA_ECOLI PHENYLALANYL-TRNA SYNTHETASE ALPHA; E=3e-75 COG: pheS; COG0016 Phenylalanyl-tRNA synthetase alpha subunit; E=3e-76 PFAM: PF02912; Aminoacyl tRNA synthetase class; E=3.9e-08 PF01409; tRNA synthetases class II (F); E=9.4e-92; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
   0.570
RB11031
Hypothetical protein.
       0.564
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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