Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11041Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038. (349 aa)    
Predicted Functional Partners:
RB8516
Similar to secretion protein; PMID: 10984043 best DB hits: BLAST: pir:D83024; probable secretion protein PA4974 [imported] -; E=0.28 pir:A82540; outer membrane export factor XF2586 [imported] - Xylella; E=0.31 pir:B83071; hypothetical protein PA4592 [imported] - Pseudomonas; E=0.45 PFAM: PF02321; Outer membrane efflux protein; E=8.2e-07.
  
     0.756
RB7078
Hypothetical protein; Best DB hits: PFAM: PF02321; Outer membrane efflux protein; E=0.52.
  
     0.755
flgI-2
Best DB hits: BLAST: pir:G72242; flagellar P-ring protein - Thermotoga maritima (strain; E=9e-07 gb:AAG09321.1; (AF178757) CpcF [Nostoc sp. PCC 7120]; E=0.10 pir:T44927; hypothetical protein orf398 [imported] - Anabaena sp; E=0.47 COG: TM1539; COG1706 Flagellar basal-body P-ring protein; E=9e-08.
  
     0.750
RB9308
Hypothetical protein-putative conserved hypothetical protein; Best DB hits: PFAM: PF02321; Outer membrane efflux protein; E=5.8e-06.
  
     0.750
aprF
Similar to AprF-putative outer membrane efflux protein or secreted alkaline phosphatase; PMID: 11222613 best DB hits: BLAST: gb:AAF87592.1; AF286062_5 (AF286062) AprF [Pseudomonas; E=0.29 gb:AAF01330.1; (AF188365) outer membrane protein [Pseudomonas; E=0.64 PFAM: PF02321; Outer membrane efflux protein; E=2.3e-05.
  
     0.740
RB6045
Hypothetical protein-transmembrane prediction.
  
     0.736
RB7603
Best DB hits: BLAST: pir:T23334; hypothetical protein K04H8.3 - Caenorhabditis elegans; E=0.53 PFAM: PF02321; Outer membrane efflux protein; E=0.0021.
  
     0.733
comQ
Similar to general secretory pathway protein D; PMID: 10419967 best DB hits: BLAST: gb:AAK00351.1; AF329876_7 (AF329876) putative outer membrane protein; E=2e-10 embl:CAA32520.1; (X14336) gene IV product [Bacteriophage I2-2]; E=2e-08 pir:D82816; fimbrial assembly protein XF0373 [imported] - Xylella; E=4e-05 COG: XF0373; COG1450 General secretory pathway protein D; E=3e-06 PFAM: PF00263; Bacterial type II and III secretion; E=5.3e-20; Belongs to the bacterial secretin family.
  
    0.729
RB1793
Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:F72424; hypothetical protein - Thermotoga maritima (strain MSB8); E=0.098.
  
     0.713
gspK
Probable general secretion pathway protein K; PMID: 8407845 best DB hits: BLAST: gb:AAC70108.1; (AF074613) type II secretion protein [Escherichia; E=2e-06 swissprot:P34026; GSPK_XANCP GENERAL SECRETION PATHWAY PROTEIN K; E=5e-04 swissprot:P31706; GSPK_ERWCA GENERAL SECRETION PATHWAY PROTEIN K; E=0.002 COG: XF1523; COG3156 General secretion pathway protein K; E=2e-04.
  
   0.698
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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