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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11047Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:G83341; hypothetical protein PA2428 [imported] - Pseudomonas; E=1e-102 gb:AAB09718.1; (U12891) ORF1 [Pseudomonas aeruginosa]; E=1e-101 pir:B82287; conserved hypothetical protein VC0728 [imported] -; E=2e-81 COG: PA2428; COG2326 Uncharacterized BCR; E=1e-103. (329 aa)    
Predicted Functional Partners:
ppk
Polyphosphate kinase; Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP); Belongs to the polyphosphate kinase 1 (PPK1) family.
 
  
 0.947
ppaC
Probable manganese-dependent inorganic pyrophosphatase; PMID: 9782505 best DB hits: BLAST: pir:D72359; conserved hypothetical protein - Thermotoga maritima; E=2e-49 swissprot:Q9WZ56; PPAC_THEMA PROBABLE MANGANESE-DEPENDENT; E=2e-49 swissprot:P37487; PPAC_BACSU MANGANESE-DEPENDENT INORGANIC; E=3e-29 COG: TM0587_3; COG1227 Inorganic pyrophosphatase/exopolyphosphatase; E=4e-31 BS_ytoI; COG0517 CBS domains; E=3e-04 VNG0941C; COG0857 BioD-like N-terminal domain of; E=0.002 PFAM: PF01368; DHH family; E=0.0015 PF00571; CBS domain; E=2.1e-07 PF02833; DHHA2 domain; E=5e-12.
     
  0.900
RB6350
PMID: 10984043 best DB hits: BLAST: pir:E83450; probable cytochrome oxidase subunit (cbb3-type) PA1557; E=1e-134 pir:E81050; cytochrome-c oxidase (EC 1.9.3.1) fixN chain NMB1725; E=1e-132 pir:C83452; probable cytochrome oxidase subunit (cbb3-type) PA1554; E=1e-129 COG: PA1557; COG3278 Cbb3-type cytochrome oxidase, subunit 1; E=1e-135 NMB1724; COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit; E=8e-38 slr1137; COG0843 Heme/copper-type cytochrome/quinol oxidases,; E=6e-12 PFAM: PF00115; Cytochrome C and Quinol oxidase poly; E=3.4e-65 PF02433; Cytochrome C oxidase, mono-heme subu [...]
   
    0.855
nptA
nptA protein; PMID: 7478940 best DB hits: BLAST: pir:D82295; nptA protein VC0676 [imported] - Vibrio cholerae (group; E=9e-73 gb:AAC42026.1; (L33878) renal cortical Na+Pi co-transporter [Mus; E=1e-18 gb:AAC52361.1; (U22465) NaPi-cotransporter [Mus musculus]; E=1e-18 COG: VC0676; COG1283 Na+/phosphate symporter; E=9e-74 PFAM: PF02659; Domain of unknown function DUF; E=0.051 PF02690; Na+/Pi-cotransporter; E=2.8e-96.
  
  
 0.777
RB11049
Hypothetical protein.
       0.773
RB11052
Conserved hypothetical protein; PMID: 9634230 best DB hits: BLAST: pir:E70933; hypothetical protein Rv0574c - Mycobacterium; E=0.88.
       0.757
RB10442
Probable methyltransferase or Fe-S oxidoreductase; Best DB hits: BLAST: swissprot:P42349; YC42_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=1e-97 swissprot:Q55914; Y309_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=2e-28 swissprot:O58549; Y819_PYRHO HYPOTHETICAL METHYLTRANSFERASE PH0819; E=3e-18 COG: sll1242; COG1032 Fe-S oxidoreductases family 2; E=9e-99.
   
    0.518
slr0309
Hypothetical methyltransferase; PMID: 8590279 best DB hits: BLAST: swissprot:Q55914; Y309_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=3e-26 swissprot:O58549; Y819_PYRHO HYPOTHETICAL METHYLTRANSFERASE PH0819; E=1e-23 swissprot:P42349; YC42_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=2e-18 COG: slr0309; COG1032 Fe-S oxidoreductases family 2; E=3e-27.
   
    0.518
RB5334
Fe-S oxidoreductase; Best DB hits: BLAST: embl:CAB75387.1; (AL139298) hypothetical protein [Streptomyces; E=1e-110 pir:H72336; conserved hypothetical protein - Thermotoga maritima; E=1e-103 pir:S77440; hypothetical protein sll1084 - Synechocystis sp. (strain; E=2e-93 COG: TM0770; COG1032 Fe-S oxidoreductases family 2; E=1e-104 slr0082; COG0621 Fe-S oxidoreductases family 1; E=0.008.
   
    0.518
RB5647
Putative methyltransferase; PMID: 8905231 best DB hits: BLAST: swissprot:P42349; YC42_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=1e-58 swissprot:Q55914; Y309_SYNY3 HYPOTHETICAL METHYLTRANSFERASE; E=4e-27 pir:E72242; Mg-protoporphyrin IX monomethyl ester oxidative; E=3e-11 COG: sll1242; COG1032 Fe-S oxidoreductases family 2; E=9e-60 PFAM: PF00750; tRNA synthetases class I (R); E=0.67.
   
    0.518
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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