STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11052Conserved hypothetical protein; PMID: 9634230 best DB hits: BLAST: pir:E70933; hypothetical protein Rv0574c - Mycobacterium; E=0.88. (91 aa)    
Predicted Functional Partners:
nptA
nptA protein; PMID: 7478940 best DB hits: BLAST: pir:D82295; nptA protein VC0676 [imported] - Vibrio cholerae (group; E=9e-73 gb:AAC42026.1; (L33878) renal cortical Na+Pi co-transporter [Mus; E=1e-18 gb:AAC52361.1; (U22465) NaPi-cotransporter [Mus musculus]; E=1e-18 COG: VC0676; COG1283 Na+/phosphate symporter; E=9e-74 PFAM: PF02659; Domain of unknown function DUF; E=0.051 PF02690; Na+/Pi-cotransporter; E=2.8e-96.
       0.773
RB11047
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:G83341; hypothetical protein PA2428 [imported] - Pseudomonas; E=1e-102 gb:AAB09718.1; (U12891) ORF1 [Pseudomonas aeruginosa]; E=1e-101 pir:B82287; conserved hypothetical protein VC0728 [imported] -; E=2e-81 COG: PA2428; COG2326 Uncharacterized BCR; E=1e-103.
       0.757
RB11049
Hypothetical protein.
       0.757
RB11055
Conserved hypothetical protein; PMID: 10470850 best DB hits: BLAST: ddbj:BAB09588.1; (AB018118) gene_id:MRI1.6~pir D64592~similar to; E=7e-09 pir:G83627; probable nucleoside hydrolase PA0143 [imported] -; E=0.010 COG: PA0143; COG1957 Inosine-uridine nucleoside N-ribohydrolase; E=0.001 PFAM: PF01156; Inosine-uridine preferring nucle; E=0.022 PF02012; BNR repeat; E=0.32.
       0.507
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.