STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11055Conserved hypothetical protein; PMID: 10470850 best DB hits: BLAST: ddbj:BAB09588.1; (AB018118) gene_id:MRI1.6~pir D64592~similar to; E=7e-09 pir:G83627; probable nucleoside hydrolase PA0143 [imported] -; E=0.010 COG: PA0143; COG1957 Inosine-uridine nucleoside N-ribohydrolase; E=0.001 PFAM: PF01156; Inosine-uridine preferring nucle; E=0.022 PF02012; BNR repeat; E=0.32. (733 aa)    
Predicted Functional Partners:
RB3804
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.756
RB11249
Similar to acyl-CoA thioesterase I; Best DB hits: BLAST: swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=0.28 gb:AAB40248.1; (U82664) acyl-coA thioesterase I precursor; E=0.28 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=0.32.
  
     0.741
RB11948
Probable secreted protein-putative xanthan lyase related; PMID: 97000351 best DB hits: BLAST: ddbj:BAB21059.1; (AB037178) xanthan lyase [Bacillus sp. GL1]; E=2e-08 embl:CAB62685.1; (AL133422) putative membrane protein; E=3e-08 embl:CAB62757.1; (AL133424) putative secreted protein; E=8e-08 PFAM: PF00070; Pyridine nucleotide-disulphide; E=0.00038.
  
    0.737
RB3953
PMID: 9923682 best DB hits: BLAST: pir:B71970; cytochrome oxidase (cbb3-type) - Helicobacter pylori; E=2e-04 pir:C64538; cytochrome-c oxidase (EC 1.9.3.1) chain fixP -; E=0.003 ddbj:BAA33529.1; (AB018105) cb-type cytochrome c oxidase subunit; E=0.009 COG: jhp0135; COG2010 Cytochrome c, mono- and diheme variants; E=2e-05 PFAM: PF00034; Cytochrome c; E=0.00073.
  
     0.721
RB344
Probable xanthan lyase; PMID: 11157235 PMID: 10966413 best DB hits: BLAST: ddbj:BAB21059.1; (AB037178) xanthan lyase [Bacillus sp. GL1]; E=3e-13 gb:AAG24953.1; AF242413_1 (AF242413) XalA [Paenibacillus; E=2e-10 gb:AAG42262.1; AF318176_1 (AF318176) putative xanthan lyase XalB; E=0.050 PFAM: PF00070; Pyridine nucleotide-disulphide; E=0.00077.
  
    0.708
RB5616
Best DB hits: BLAST: pir:B69988; hypothetical protein ytaP - Bacillus subtilis -----; E=3e-15 ddbj:BAA81869.1; (AB026295) ESTs C19441(E10423),C99201(E10423); E=2e-08 pir:G82643; conserved hypothetical protein XF1745 [imported] -; E=0.12 PFAM: PF00969; Class II histocompatibility ant; E=0.17.
 
     0.694
RB5300
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.693
RB9557
Hypothetical protein-transmembrane prediction.
  
     0.691
RB3971
Hypothetical protein-signal peptide and transmembrane prediction.
 
     0.676
RB11994
Conserved hypothetical protein-putative secreted protein; PMID: 9384377 best DB hits: BLAST: pir:B69988; hypothetical protein ytaP - Bacillus subtilis -----; E=0.20.
  
     0.674
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.