STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
marRProbable MarR-family regulatory protein; PMID: 11473263 PMID: 9068629 best DB hits: BLAST: pir:A82692; transcription regulator MarR family XF1354 [imported] -; E=1e-04 embl:CAB95985.1; (AL360034) putative MarR-family regulatory; E=2e-04 gb:AAB87745.1; (U89914) hypothetical 16.1 kDa transcriptional; E=2e-04 COG: XF1354; COG1846 Transcriptional regulators; E=1e-05 PFAM: PF01047; MarR family; E=9.8e-17. (167 aa)    
Predicted Functional Partners:
acrB
Acriflavine resistance protein B; PMID: 8905231 PMID: 8407802 PMID: 7651136 best DB hits: BLAST: pir:F83335; RND multidrug efflux transporter MexF PA2494 [imported] -; E=0.0 pir:T30830; hypothetical protein mexF - Pseudomonas aeruginosa -----; E=0.0 pir:D83206; probable RND efflux transporter PA3522 [imported] -; E=0.0 COG: PA2494; COG0841 Cation/multidrug efflux pump; E=0.0 PFAM: PF00873; AcrB/AcrD/AcrF family; E=0; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.510
acrA
Acriflavine resistance protein A [Precursor]; PMID: 10984043 best DB hits: BLAST: pir:E83335; RND multidrug efflux membrane fusion protein MexE; E=1e-54 pir:T30829; hypothetical protein mexE - Pseudomonas aeruginosa; E=1e-52 pir:E83206; probable RND efflux membrane fusion protein precursor; E=2e-42 COG: PA2493; COG0845 Membrane-fusion protein; E=1e-55 PFAM: PF00364; Biotin-requiring enzyme; E=0.0006 PF00529; HlyD family secretion protein; E=4e-20; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.509
RB11077
Conserved hypothetical protein; PMID: 10761919 best DB hits: BLAST: pir:D81775; conserved hypothetical protein NMA2048 [imported] -; E=3e-17 pir:F81198; conserved hypothetical protein NMB0437 [imported] -; E=4e-17 gb:AAC61685.1; (AF052517) CDG1D [Acetobacter xylinus]; E=1e-15 COG: NMB0437; COG1959 Predicted transcriptional regulator; E=4e-18 PFAM: PF02082; Uncharacterized protein family UPF00; E=1.3e-33.
     
 0.465
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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