STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1109Putative multi-domain protein; PMID: 8843436 best DB hits: BLAST: embl:CAB58265.1; (AL121849) putative multi-domain protein; E=2e-24 embl:CAB45032.1; (AL078635) putative large multi-functional; E=3e-24 pir:T36423; probable large, multifunctional secreted protein -; E=0.003. (271 aa)    
Predicted Functional Partners:
RB9438
Best DB hits: BLAST: pir:T36423; probable large, multifunctional secreted protein -; E=4e-50 embl:CAB45032.1; (AL078635) putative large multi-functional; E=6e-45.
 
     0.922
RB3951
Putative large multi-functional protein; Best DB hits: BLAST: pir:T36423; probable large, multifunctional secreted protein -; E=1e-59 embl:CAB45032.1; (AL078635) putative large multi-functional; E=4e-53.
 
     0.920
RB9196
Probable secreted glycosyl hydrolase; Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-05 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=1e-04.
  
    0.775
RB5644
Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=6e-04 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=7e-04 embl:CAB45032.1; (AL078635) putative large multi-functional; E=0.055.
  
     0.774
RB12073
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:A83457; conserved hypothetical protein PA1501 [imported] -; E=1e-17 pir:D83577; conserved hypothetical protein PA0550 [imported] -; E=8e-13 gb:AAG54864.1; AE005231_11 (AE005231) glyoxylate-induced protein; E=5e-12 COG: PA1501; COG1082 Predicted endonucleases; E=1e-18; Belongs to the hyi family.
  
     0.764
RB1854
Best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=5e-22 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=1e-12 pir:T35029; hypothetical protein SC4C6.21c - Streptomyces coelicolor; E=8e-05.
  
     0.764
RB273
Probable secreted glycosyl hydrolase; Best DB hits: BLAST: embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=7e-08 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=1e-07 embl:CAB45032.1; (AL078635) putative large multi-functional; E=0.002.
  
     0.764
RB3635
Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=4e-06 pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=3e-05 pir:T35028; probable glycosyl hydrolase - Streptomyces coelicolor; E=2e-04.
  
     0.757
RB7152
Probable secreted glycosyl hydrolase; PMID: 8843436 best DB hits: BLAST: pir:T34929; hypothetical protein SC3F9.07 SC3F9.07 - Streptomyces; E=5e-09 embl:CAB94634.1; (AL359215) putative secreted glycosyl hydrolase; E=3e-07 PFAM: PF01302; CAP-Gly domain; E=0.33.
  
     0.750
RB1555
Probable NADH-dependent dehydrogenase; PMID: 10484179 best DB hits: BLAST: gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=1e-09 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=1e-08 swissprot:Q54728; YJHC_STRPN HYPOTHETICAL PROTEIN IN NANB 3'REGION; E=3e-07 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=9e-10 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=3.2e-12.
  
     0.741
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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