STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11104Hypothetical protein-transmembrane prediction. (121 aa)    
Predicted Functional Partners:
RB11101
Hypothetical protein-transmembrane region and signal peptide prediction; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038.
       0.806
RB11100
Putative toxin; PMID: 2116013 PMID: 1735717 PMID: 1502169 PMID: 1400485 best DB hits: BLAST: pir:A64819; hypothetical protein b0817 - Escherichia coli -----; E=2e-18 gb:AAG55189.1; AE005262_9 (AE005262) putative toxin [Escherichia; E=2e-18 pir:A82733; conserved hypothetical protein XF1013 [imported] -; E=1e-17 COG: ybiQ; COG1321 Mn-dependent transcriptional regulator; E=2e-19 PFAM: PF01325; Iron dependent repressor, N-te; E=5.1e-09 PF02742; Iron dependent repressor, meta; E=4.5e-09.
       0.492
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.