STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11119Pipeptidyl-peptidase VI; PMID: 1587462 PMID: 1551459 best DB hits: BLAST: swissprot:P39043; DPP6_BACSH DIPEPTIDYL-PEPTIDASE VI (DPP VI); E=2e-19 pir:A69856; polysugar degrading enzyme homolog ykfC - Bacillus; E=6e-14 ddbj:BAB06726.1; (AP001517) polysugar degrading enzyme; E=7e-14 COG: BS_ykfC; COG0791 Cell wall-associated hydrolases; E=6e-15 BH3007; COG0791 Cell wall-associated hydrolases (invasion-associated; E=6e-15 DR1325_2; COG0791 Cell wall-associated hydrolases; E=2e-12 PFAM: PF00877; NLP/P60 family; E=4.2e-24. (404 aa)    
Predicted Functional Partners:
RB11118
Chloromuconate cycloisomerase YkfB1; PMID: 11016950 best DB hits: BLAST: gb:AAG20045.1; (AE005084) chloromuconate cycloisomerase; YkfB1; E=8e-48 gb:AAF28135.1; AF153317_32 (AF153317) YcjG [Shigella dysenteriae]; E=6e-28 swissprot:P51981; YCJG_ECOLI HYPOTHETICAL 34.7 KD PROTEIN IN; E=1e-27 COG: VNG1837G; COG1441 O-succinylbenzoate synthase and related enzymes; E=8e-49 PFAM: PF02746; Mandelate racemase / muconate; E=1.3e-09 PF01188; Mandelate racemase / muconate; E=4.9e-21.
 
  
 0.927
ykfB
Chloromuconate cycloisomerase YkfB1; PMID: 2583528 best DB hits: BLAST: gb:AAG20045.1; (AE005084) chloromuconate cycloisomerase; YkfB1; E=3e-38 pir:H64881; hypothetical protein b1325 - Escherichia coli -----; E=1e-24 swissprot:P51981; YCJG_ECOLI HYPOTHETICAL 34.7 KD PROTEIN IN; E=8e-24 COG: VNG1837G; COG1441 O-succinylbenzoate synthase and related enzymes; E=3e-39 PFAM: PF02746; Mandelate racemase / muconate lacton; E=0.00038 PF01188; Mandelate racemase / muconate lacton; E=9.6e-23.
 
  
 0.607
RB11121
Hypothetical protein.
       0.557
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.