Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RB11122Hypothetical protein. (79 aa)    
Predicted Functional Partners:
aslA-2
PMID: 8020961 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=3e-31 pir:S07089; arylsulfatase (EC 3.1.6.1) - sea urchin (Lytechinus; E=9e-29 swissprot:P14000; ARS_HEMPU ARYLSULFATASE PRECURSOR (ARYL-SULFATE; E=9e-29 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-27 PFAM: PF00884; Sulfatase; E=1.6e-44.
       0.741
ids
Iduronate-2-sulfatase; PMID: 8325651 best DB hits: BLAST: gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=1e-55 gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=5e-53 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=2e-52 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=8e-36 BS_yfnI; COG1368 Phosphoglycerol transferase and related proteins,; E=4e-05 VC2600; COG3083 Predicted hydrolase of alkaline phosphatase; E=5e-05 PFAM: PF00884; Sulfatase; E=8.7e-22.
       0.456
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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