Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RB11142Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF01011; PQQ enzyme repeat; E=0.34. (481 aa)    
Predicted Functional Partners:
adh
Probable alcohol dehydrogenase [acceptor]; PMID: 2001402 best DB hits: BLAST: swissprot:P28036; DHET_ACEPO ALCOHOL DEHYDROGENASE [ACCEPTOR]; E=0.003 gb:AAB89850.1; (AE001008) conserved hypothetical protein; E=0.003 swissprot:Q44002; DHET_ACEEU ALCOHOL DEHYDROGENASE [ACCEPTOR]; E=0.004 COG: AF1399; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-04 PFAM: PF01011; PQQ enzyme repeat; E=5.5e-05.
  
     0.774
RB7074
Conserved hypothetical protein-putative permease of ABC transporter; PMID: 9371463 best DB hits: BLAST: pir:F69192; conserved hypothetical protein MTH695 - Methanobacterium; E=0.003 gb:AAG18647.1; (AE004970) Vng0003c [Halobacterium sp. NRC-1]; E=0.015 embl:CAB89462.1; (AL354048) putative ABC transporter integral; E=0.024 COG: MTH695; COG0577 Predicted permease; E=3e-04 PFAM: PF01890; CbiG; E=0.096 PF02687; Predicted permease; E=5.7e-06 PF00951; Arterivirus GL envelope glycop; E=0.081.
  
     0.774
RB2837
Hypothetical protein-putative transmembrane protein; Best DB hits: PFAM: PF01011; PQQ enzyme repeat; E=0.14.
  
     0.773
RB9261
Conserved hypothetical protein; Best DB hits: BLAST: ddbj:BAA37082.1; (AB022095) ORF2 [Streptomyces griseus]; E=5e-45 embl:CAC04221.1; (AL391515) conserved hypothetical protein; E=9e-35 pir:G69070; coenzyme F390 synthetase I - Methanobacterium; E=0.004 COG: MTH1528; COG1541 Coenzyme F390 synthetase; E=4e-04 PFAM: PF00031; Cystatin domain; E=0.0015.
  
     0.773
RB9262
Conserved hypothetical protein-putative NAD-dependent aldehyde dehydrogenase; Best DB hits: BLAST: embl:CAC04220.1; (AL391515) conserved hypothetical protein; E=1e-21 ddbj:BAA37083.1; (AB022095) ORF3 [Streptomyces griseus]; E=8e-13 pir:E70961; hypothetical protein Rv0223c - Mycobacterium; E=4e-06 COG: Rv0223c; COG1012 NAD-dependent aldehyde dehydrogenases; E=3e-07 PFAM: PF00171; Aldehyde dehydrogenase family; E=0.21.
  
     0.768
RB1027
Probable hexosyltransferase; PMID: 11157937 best DB hits: BLAST: pir:F71196; probable hexosyltransferase (EC 2.4.1.-) PH1844 -; E=1e-09 pir:T35150; probable glycosyl transferase - Streptomyces coelicolor; E=8e-09 swissprot:Q9R9N2; LPSB_RHIME LIPOPOLYSACCHARIDE CORE BIOSYNTHESIS; E=3e-08 COG: PH1844; COG0438 Predicted glycosyltransferases; E=1e-10 PFAM: PF00534; Glycosyl transferases group 1; E=2.7e-25.
  
     0.764
RB12303
Best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-04 gb:AAG20856.1; (AE005154) Vng6189h [Halobacterium sp. NRC-1]; E=0.007 gb:AAF16758.1; AC010155_11 (AC010155) F3M18.23 [Arabidopsis; E=0.014 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-05 PFAM: PF01011; PQQ enzyme repeat; E=0.0074.
  
     0.741
shc
Probable squalene-hopene cyclase; PMID: 7894707 best DB hits: BLAST: pir:T35404; probable squalene-hopene cyclase - Streptomyces; E=6e-15 embl:CAA71101.1; (Y09979) squalene-hopene cyclase; E=1e-14 swissprot:P55348; SQHC_RHISN PROBABLE SQUALENE--HOPENE CYCLASE; E=2e-11 COG: slr2089; COG1657 Squalene cyclase; E=4e-09 PFAM: PF00432; Prenyltransferase and squalene ox; E=1.5e-06.
  
     0.729
RB10641
Probable beta-subunit of geranylgeranyltransferase or farnesyltransferase; Best DB hits: BLAST: ddbj:BAB10039.1; (AB007727) Rab geranylgeranyltransferase, beta; E=5e-05 swissprot:P41992; PFTB_CAEEL PROBABLE PROTEIN FARNESYLTRANSFERASE; E=7e-05 swissprot:Q04903; PFTB_PEA PROTEIN FARNESYLTRANSFERASE BETA; E=0.005 PFAM: PF00432; Prenyltransferase and squalene ox; E=1.4e-08.
  
     0.718
RB6486
PMID: 9371463 best DB hits: BLAST: pir:H69064; serinethreonine protein kinase related protein -; E=3e-13 pir:C75264; probable serinethreonine protein kinase - Deinococcus; E=1e-08 swissprot:P42111; YXAL_BACSU HYPOTHETICAL 38.5 KDA PROTEIN IN; E=5e-07 COG: MTH1485; COG1520 Uncharacterized proteins of WD40-like repeat family; E=3e-14 DR2518_2; COG1520 Uncharacterized proteins of WD40-like repeat; E=5e-09 BS_yxaL; COG1520 Uncharacterized proteins of WD40-like repeat family; E=4e-08 PFAM: PF01011; PQQ enzyme repeat; E=0.0066.
  
     0.700
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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