Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
arsCProbable arsenate reductase; PMID: 10567266 PMID: 9537360 PMID: 8003493 best DB hits: BLAST: pir:F75607; arsenate reductase - Deinococcus radiodurans (strain R1); E=1e-04 swissprot:P45947; ARSC_BACSU ARSENATE REDUCTASE (ARSENICAL PUMP; E=0.001 pir:B70360; arsenate reductase - Aquifex aeolicus -----gb:; E=0.014 COG: DRA0123; COG0394 Protein-tyrosine-phosphatase; E=1e-05. (216 aa)    
Predicted Functional Partners:
RB11174
Conserved hypothetical protein; PMID: 10567266 best DB hits: BLAST: pir:E75584; conserved hypothetical protein - Deinococcus radiodurans; E=2e-54 ddbj:BAA86645.1; (AB033763) hypothetical protein [Staphylococcus; E=4e-45 pir:T44111; conserved hypothetical protein [imported] -; E=2e-33 COG: DRA0304_1; COG0491 Zn-dependent hydrolases, including glyoxylases; E=5e-42 MTH1096; COG0607 Rhodanese-related sulfurtransferases; E=6e-17 BS_yrkH; COG0491 Zn-dependent hydrolases, including glyoxylases; E=2e-16 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=6.1e-25 PF00581; Rhodanese-like domain; [...]
  
   0.772
RB11227
Conserved hypothetical protein; PMID: 7588620 best DB hits: BLAST: ddbj:BAA86645.1; (AB033763) hypothetical protein [Staphylococcus; E=9e-94 pir:E75584; conserved hypothetical protein - Deinococcus radiodurans; E=3e-90 pir:T44111; conserved hypothetical protein [imported] -; E=2e-76 COG: DRA0304_1; COG0491 Zn-dependent hydrolases, including glyoxylases; E=3e-63 DRA0304_2; COG0607 Rhodanese-related sulfurtransferases; E=2e-22 BS_yrkH; COG0491 Zn-dependent hydrolases, including glyoxylases; E=2e-17 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=7.1e-27 PF00581; Rhodanese-like domain [...]
  
   0.772
arsA-10
ArsA-catalytic subunit of arsenic oxyanion-translocating ATPase; PMID: 9464374 best DB hits: BLAST: gb:AAD51849.1; AF178758_5 (AF178758) ArsA [Sinorhizobium sp. As4]; E=1e-162 swissprot:O50593; ARSA_ACIMU ARSENICAL PUMP-DRIVING ATPASE; E=1e-148 swissprot:P52145; ARA2_ECOLI ARSENICAL PUMP-DRIVING ATPASE; E=1e-147 COG: MJ1142; COG0003 Arsenite transporting ATPase; E=6e-22 PA1462; COG1192 ATPases involved in chromosome partitioning; E=4e-04 PFAM: PF01583; Adenylylsulfate kinase; E=0.42 PF00142; 4Fe-4S iron sulfur cluster bi; E=0.31 PF01695; IstB-like ATP binding protein; E=0.025.
    
 0.590
RB10401
Similar to type 8 capsule gene Cap8B; PMID: 8606192 PMID: 9045821 best DB hits: BLAST: gb:AAB49431.1; (U73374) Cap8B [Staphylococcus aureus]; E=6e-19 gb:AAC46085.1; (U81973) Cap5B [Staphylococcus aureus]; E=1e-18 ddbj:BAB07387.1; (AP001519) capsular polysaccharide biosynthesis; E=2e-18 COG: BH3668; COG0489 ATPases involved in chromosome partitioning; E=2e-19 MJ0547; COG0455 ATPases involved in chromosome partitioning; E=1e-04 PFAM: PF00142; 4Fe-4S iron sulfur cluster bindin; E=0.68.
 
 
 0.554
RB783
Probable integral membrane efflux protein; Best DB hits: BLAST: swissprot:P74311; Y944_SYNY3 HYPOTHETICAL 42.4 KDA PROTEIN SLR0944; E=2e-86 pir:H81780; probable integral membrane efflux protein NMA2095; E=3e-47 gb:AAK04027.1; (AE006231) unknown [Pasteurella multocida]; E=7e-40 COG: slr0944; COG0798 Arsenite efflux pump ACR3 and related permeases; E=2e-87 PFAM: PF01758; Sodium Bile acid symporter family; E=7.8e-49.
  
  
 0.531
RB12360
Levanase precursor; PMID: 3112519 PMID: 2117666 best DB hits: BLAST: pir:A27286; levanase (EC 3.2.1.65) precursor - Bacillus subtilis; E=3e-54 swissprot:P05656; SACC_BACSU LEVANASE PRECURSOR; E=3e-54 prf:1404371A; levanase [Bacillus subtilis]; E=3e-54 COG: BS_sacC; COG1621 Beta-fructosidases (levanase/invertase); E=3e-55 PFAM: PF00251; Glycosyl hydrolases family 32; E=4.6e-10 PF02012; BNR repeat; E=0.81 PF00251; Glycosyl hydrolases family 32; E=3.1e-15.
  
 
 0.522
RB5832
Hypothetical protein.
  
 
 0.522
epsB
PMID: 7476194 best DB hits: BLAST: pir:G70066; capsular polysaccharide biosynthesis homolog ywqD -; E=2e-28 swissprot:Q45409; EPSB_BURSO EPS I POLYSACCHARIDE EXPORT PROTEIN; E=2e-28 pir:G82262; probable exopolysaccharide biosynthesis protein VC0937; E=8e-28 COG: BS_ywqD; COG0489 ATPases involved in chromosome partitioning; E=2e-29 VNG0946G; COG0455 ATPases involved in chromosome partitioning; E=3e-08 BH3027; COG2894 Septum formation inhibitor-activating ATPase; E=6e-08 PFAM: PF00142; 4Fe-4S iron sulfur cluster bindin; E=0.016 PF00991; ParA family ATPase; E=0.3.
  
 
 0.490
RB11146
Putative hydrolase; PMID: 97000351 PMID: 2380986 best DB hits: BLAST: embl:CAB92202.1; (AL356592) putative hydrolase. [Streptomyces; E=2e-33 pir:D70881; hypothetical protein Rv2765 - Mycobacterium tuberculosis; E=3e-29 embl:CAC04055.1; (AL391406) putative hydrolase (dienelactone; E=9e-23 COG: Rv2765; COG0412 Dienelactone hydrolase and related enzymes; E=3e-30 PFAM: PF02277; Phosphoribosyltransferase; E=0.45 PF00561; alpha/beta hydrolase fold; E=0.6 PF01738; Dienelactone hydrolase family; E=2e-34.
       0.484
amsG
UDP-galactose-lipid carrier transferase; PMID: 7596293 best DB hits: BLAST: swissprot:Q57491; Y872_HAEIN HYPOTHETICAL SUGAR TRANSFERASE HI0872; E=3e-56 swissprot:Q46628; AMSG_ERWAM UDP-GALACTOSE-LIPID CARRIER; E=5e-56 pir:S61891; undecaprenyl-phosphate galactosephosphotransferase (EC; E=5e-56 COG: HI0872; COG2148 Sugar transferases involved in lipopolysaccharide; E=2e-57 PFAM: PF00895; ATP synthase protein 8; E=0.37 PF02397; Bacterial sugar transferase; E=3.6e-89.
  
  
 0.479
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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