STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11207Conserved hypothetical protein; PMID: 8590279 best DB hits: BLAST: swissprot:Q55909; Y305_SYNY3 HYPOTHETICAL 22.2 KD PROTEIN SLR0305; E=2e-40 gb:AAB72174.1; (AF000657) unknown protein [Arabidopsis thaliana]; E=3e-33 gb:AAC72122.1; (AC005278) F15K9.14 [Arabidopsis thaliana]; E=1e-27 COG: slr0305; COG0398 Uncharacterized ACR; E=2e-41 aq_2066; COG1238 Uncharacterized membrane protein; E=7e-04 BS_yhjE; COG0398 Uncharacterized ACR; E=8e-04. (538 aa)    
Predicted Functional Partners:
merA
Mercuric reductase; PMID: 2536669 PMID: 2067577 best DB hits: BLAST: pir:S75167; mercuric reductase - Synechocystis sp. (strain PCC 6803); E=1e-121 embl:CAA70224.1; (Y09024) mercuric reductase [Bacillus cereus]; E=9e-60 pir:T44505; merA protein [imported] - Clostridium butyricum -----; E=3e-59 COG: slr1849; COG1249 Dihydrolipoamide dehydrogenase/glutathione; E=1e-122 PFAM: PF00732; GMC oxidoreductases; E=0.074 PF02254; KTN NAD-binding domain; E=0.7 PF00899; ThiF family; E=0.22.
     0.869
RB8932
Conserved hypothetical protein; Best DB hits: BLAST: ddbj:BAA84086.1; (AB032065) hypothetical protein [Streptomyces; E=3e-15 embl:CAB61872.1; (AL133252) hypothetical protein SCE46.21; E=7e-14 gb:AAC15821.1; (U44977) unknown [Prochlorococcus marinus]; E=7e-13 COG: sll1095; COG3222 Uncharacterized BCR; E=5e-08.
 
     0.777
RB2206
Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S76621; hypothetical protein - Synechocystis sp. (strain PCC; E=9e-23 ddbj:BAA84086.1; (AB032065) hypothetical protein [Streptomyces; E=6e-21 embl:CAB61873.1; (AL133252) hypothetical protein SCE46.22; E=6e-21 COG: slr0092; COG0463 Glycosyltransferases involved in cell wall; E=8e-24 PAB1314; COG1215 Glycosyltransferases, probably involved in cell; E=2e-07 Rv2957; COG0463 Glycosyltransferases involved in cell wall; E=7e-07 PFAM: PF00535; Glycosyl transferase; E=2.6e-21.
 
     0.765
RB6747
Conserved hypothetical protein-putative Fe-S oxidoreductases; PMID: 8905231 best DB hits: BLAST: pir:S76979; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-56 embl:CAC24148.1; (AL512973) Hypothetical protein [Sulfolobus; E=5e-05 pir:C83581; heme d1 biosynthesis protein NirJ PA0511 [imported] -; E=0.016 COG: slr0304; COG0535 Predicted Fe-S oxidoreductases; E=3e-57.
 
     0.737
rcp1
Response regulator rcp1; PMID: 7699720 PMID: 9278513 best DB hits: BLAST: embl:CAB62661.1; (AL133422) hypothetical protein SCM1.03c; E=8e-33 pir:D75276; response regulator - Deinococcus radiodurans (strain R1); E=1e-31 swissprot:Q55169; RCP1_SYNY3 RESPONSE REGULATOR RCP1 -----; E=1e-25 COG: DR2420; COG0784 CheY-like receiver domains; E=1e-32 slr0115; COG0745 Response regulators consisting of a CheY-like; E=2e-09 sll0039; COG0784 CheY-like receiver domains; E=6e-09 PFAM: PF00072; Response regulator receiver doma; E=6.5e-19.
       0.571
cph1
Light-regulated histidine kinase 1; PMID: 10567266 best DB hits: BLAST: pir:C75276; sensory box sensor histidine kinase - Deinococcus; E=8e-45 swissprot:Q55168; PHY1_SYNY3 PHYTOCHROME-LIKE PROTEIN CPH1; E=1e-41 embl:CAB62662.1; (AL133422) putative two-component sensor; E=2e-41 COG: DR2419_2; COG0642 Sensory transduction histidine kinases; E=8e-46 PFAM: PF00512; His Kinase A (phosphoacceptor) doma; E=1e-12 PF02518; Histidine kinase-, DNA gyrase B-, p; E=3.5e-35.
       0.571
RB11204
Hypothetical protein.
       0.571
RB11208
Hypothetical protein.
       0.571
RB6746
Putative methyltransferase; PMID: 8843436 best DB hits: BLAST: gb:AAC82905.1; (AF016485) ORF H1434 [Halobacterium sp. NRC-1]; E=1e-29 embl:CAB61860.1; (AL133252) putative methyltransferase; E=5e-24 gb:AAF00618.1; AF166383_1 (AF166383) methyltransferase [Mus; E=3e-19 COG: slr0303; COG0500 SAM-dependent methyltransferases; E=1e-13 VC0083; COG2226 Methylase involved in ubiquinone/menaquinone; E=1e-07 VNG1280C; COG0500 SAM-dependent methyltransferases; E=0.001 PFAM: PF01209; ubiE/COQ5 methyltransferase f; E=0.026.
  
     0.547
moaB
Probable MPT-synthase sulfurylase; PMID: 20086437 best DB hits: BLAST: pir:S76179; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-04 embl:CAA76284.1; (Y16560) MPT-synthase sulfurylase [Synechococcus; E=4e-04 gb:AAF33130.1; AF196567_6 (AF196567) putative sulfurylase; E=0.003 COG: sll1536_2; COG0607 Rhodanese-related sulfurtransferases; E=3e-05 PFAM: PF00581; Rhodanese-like domain; E=2.8e-06.
 
    0.412
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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