STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yjhQHypothetical acetyltransferase yjhQ; PMID: 9175471 PMID: 9727486 best DB hits: BLAST: gb:AAK04154.1; AE006244_3 (AE006244) HYPOTHETICAL PROTEIN; E=2e-12 pir:B82297; probable acetyltransferase VC0655 [imported] - Vibrio; E=7e-12 pir:H83557; hypothetical protein PA0711 [imported] - Pseudomonas; E=2e-11 COG: VC0655; COG3153 Predicted acetyltransferase; E=7e-13 PFAM: PF00583; Acetyltransferase (GNAT) family; E=1.1e-16. (180 aa)    
Predicted Functional Partners:
RB11210
Hypothetical protein-transmembrane prediction.
       0.560
RB11216
Ferredoxin; Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
       0.485
RB9493
Best DB hits: BLAST: pir:G83613; probable acetyltransferase PA0249 [imported] -; E=7e-20 pir:S41381; hypothetical protein - Pseudomonas aeruginosa -----; E=5e-16 swissprot:P37664; YIAC_ECOLI HYPOTHETICAL 17.1 KDA PROTEIN IN; E=2e-13 COG: PA0249; COG0454 Histone acetyltransferase HPA2 and related; E=6e-21 Rv3420c; COG0456 Acetyltransferases; E=0.006 PFAM: PF00583; Acetyltransferase (GNAT) family; E=4.2e-21.
 
  
 0.437
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.