STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11222Hypothetical protein. (42 aa)    
Predicted Functional Partners:
RB11221
Hypothetical protein.
       0.746
kptA-2
RNA 2-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
       0.649
arsR
Probable metal-dependent regulatory protein; PMID: 8451191 PMID: 8506147 best DB hits: BLAST: pir:E70585; probable transcription regulator Rv2358 - Mycobacterium; E=4e-07 pir:B70850; probable transcription regulator Rv0081 - Mycobacterium; E=5e-07 gb:AAG02351.1; AF210249_10 (AF210249) metal-dependent regulatory; E=1e-06 COG: Rv2358; COG0640 Predicted transcriptional regulators; E=4e-08 PFAM: PF01022; Bacterial regulatory protein, arsR f; E=1.3e-13.
       0.564
RB11217
PMID: 11315111 best DB hits: BLAST: gb:AAB89527.1; (AE000984) dinitrogenase reductase activating; E=8e-11 pir:JC4745; ADP-ribosyl-nitrogenase hydrolase (EC 3.2.2.24) - rice; E=1e-06 pir:I39752; ADP-ribosyl-nitrogenase hydrolase (EC 3.2.2.24) -; E=1e-06 COG: AF1724; COG1397 ADP-ribosylglycohydrolase; E=7e-12.
       0.499
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.