STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11245Hypothetical protein. (53 aa)    
Predicted Functional Partners:
RB11247
Putative RecF protein; PMID: 2229036 PMID: 3762694 PMID: 1542576 best DB hits: BLAST: pir:B83548; hypothetical protein PA0787 [imported] - Pseudomonas; E=2e-96 gb:AAG45955.1; AF282921_1 (AF282921) putative RecF protein; E=7e-35 gb:AAB90237.1; (AE001034) A. fulgidus predicted coding region; E=0.005 PFAM: PF00005; ABC transporter; E=0.0014 PF00470; RecF protein; E=0.34 PF02463; SMC domain N terminal domain; E=0.11.
       0.773
RB11248
Best DB hits: BLAST: pir:T37506; protein-S-isoprenylcysteine O-methyltransferase (EC; E=0.095.
       0.773
RB11249
Similar to acyl-CoA thioesterase I; Best DB hits: BLAST: swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=0.28 gb:AAB40248.1; (U82664) acyl-coA thioesterase I precursor; E=0.28 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=0.32.
       0.598
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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