RB11248 protein (Rhodopirellula baltica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

RB11248

Best DB hits: BLAST: pir:T37506; protein-S-isoprenylcysteine O-methyltransferase (EC; E=0.095. (320 aa)

Predicted Functional Partners:

RB11245

0.773

RB11247

0.773

RB11249

0.598

RB3252

0.577

cypX

0.447

Your Current Organism:

Rhodopirellula baltica

NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
RB11245	RB11247	RB11245	RB11247	Hypothetical protein.	Putative RecF protein; PMID: 2229036 PMID: 3762694 PMID: 1542576 best DB hits: BLAST: pir:B83548; hypothetical protein PA0787 [imported] - Pseudomonas; E=2e-96 gb:AAG45955.1; AF282921_1 (AF282921) putative RecF protein; E=7e-35 gb:AAB90237.1; (AE001034) A. fulgidus predicted coding region; E=0.005 PFAM: PF00005; ABC transporter; E=0.0014 PF00470; RecF protein; E=0.34 PF02463; SMC domain N terminal domain; E=0.11.	0.773
RB11245	RB11248	RB11245	RB11248	Hypothetical protein.	Best DB hits: BLAST: pir:T37506; protein-S-isoprenylcysteine O-methyltransferase (EC; E=0.095.	0.773
RB11245	RB11249	RB11245	RB11249	Hypothetical protein.	Similar to acyl-CoA thioesterase I; Best DB hits: BLAST: swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=0.28 gb:AAB40248.1; (U82664) acyl-coA thioesterase I precursor; E=0.28 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=0.32.	0.598
RB11247	RB11245	RB11247	RB11245	Putative RecF protein; PMID: 2229036 PMID: 3762694 PMID: 1542576 best DB hits: BLAST: pir:B83548; hypothetical protein PA0787 [imported] - Pseudomonas; E=2e-96 gb:AAG45955.1; AF282921_1 (AF282921) putative RecF protein; E=7e-35 gb:AAB90237.1; (AE001034) A. fulgidus predicted coding region; E=0.005 PFAM: PF00005; ABC transporter; E=0.0014 PF00470; RecF protein; E=0.34 PF02463; SMC domain N terminal domain; E=0.11.	Hypothetical protein.	0.773
RB11247	RB11248	RB11247	RB11248	Putative RecF protein; PMID: 2229036 PMID: 3762694 PMID: 1542576 best DB hits: BLAST: pir:B83548; hypothetical protein PA0787 [imported] - Pseudomonas; E=2e-96 gb:AAG45955.1; AF282921_1 (AF282921) putative RecF protein; E=7e-35 gb:AAB90237.1; (AE001034) A. fulgidus predicted coding region; E=0.005 PFAM: PF00005; ABC transporter; E=0.0014 PF00470; RecF protein; E=0.34 PF02463; SMC domain N terminal domain; E=0.11.	Best DB hits: BLAST: pir:T37506; protein-S-isoprenylcysteine O-methyltransferase (EC; E=0.095.	0.773
RB11247	RB11249	RB11247	RB11249	Putative RecF protein; PMID: 2229036 PMID: 3762694 PMID: 1542576 best DB hits: BLAST: pir:B83548; hypothetical protein PA0787 [imported] - Pseudomonas; E=2e-96 gb:AAG45955.1; AF282921_1 (AF282921) putative RecF protein; E=7e-35 gb:AAB90237.1; (AE001034) A. fulgidus predicted coding region; E=0.005 PFAM: PF00005; ABC transporter; E=0.0014 PF00470; RecF protein; E=0.34 PF02463; SMC domain N terminal domain; E=0.11.	Similar to acyl-CoA thioesterase I; Best DB hits: BLAST: swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=0.28 gb:AAB40248.1; (U82664) acyl-coA thioesterase I precursor; E=0.28 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=0.32.	0.598
RB11248	RB11245	RB11248	RB11245	Best DB hits: BLAST: pir:T37506; protein-S-isoprenylcysteine O-methyltransferase (EC; E=0.095.	Hypothetical protein.	0.773
RB11248	RB11247	RB11248	RB11247	Best DB hits: BLAST: pir:T37506; protein-S-isoprenylcysteine O-methyltransferase (EC; E=0.095.	Putative RecF protein; PMID: 2229036 PMID: 3762694 PMID: 1542576 best DB hits: BLAST: pir:B83548; hypothetical protein PA0787 [imported] - Pseudomonas; E=2e-96 gb:AAG45955.1; AF282921_1 (AF282921) putative RecF protein; E=7e-35 gb:AAB90237.1; (AE001034) A. fulgidus predicted coding region; E=0.005 PFAM: PF00005; ABC transporter; E=0.0014 PF00470; RecF protein; E=0.34 PF02463; SMC domain N terminal domain; E=0.11.	0.773
RB11248	RB11249	RB11248	RB11249	Best DB hits: BLAST: pir:T37506; protein-S-isoprenylcysteine O-methyltransferase (EC; E=0.095.	Similar to acyl-CoA thioesterase I; Best DB hits: BLAST: swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=0.28 gb:AAB40248.1; (U82664) acyl-coA thioesterase I precursor; E=0.28 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=0.32.	0.598
RB11248	RB3252	RB11248	RB3252	Best DB hits: BLAST: pir:T37506; protein-S-isoprenylcysteine O-methyltransferase (EC; E=0.095.	Hypothetical protein-putative transmembrane protein.	0.577
RB11248	cypX	RB11248	RB11252	Best DB hits: BLAST: pir:T37506; protein-S-isoprenylcysteine O-methyltransferase (EC; E=0.095.	Probable cytochrome P450 T9E850; PMID: 20411542 best DB hits: BLAST: pir:T06288; probable cytochrome P450 T9E8.50 - Arabidopsis thaliana; E=5e-14 ddbj:BAA31438.1; (AB010393) ALK6 [Yarrowia lipolytica]; E=3e-13 pir:C81286; probable cytochrome P450 Cj1411c [imported] -; E=5e-13 COG: Cj1411c; COG2124 Cytochrome P450; E=4e-14 PFAM: PF00067; Cytochrome P450; E=1e-20.	0.447
RB11249	RB11245	RB11249	RB11245	Similar to acyl-CoA thioesterase I; Best DB hits: BLAST: swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=0.28 gb:AAB40248.1; (U82664) acyl-coA thioesterase I precursor; E=0.28 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=0.32.	Hypothetical protein.	0.598
RB11249	RB11247	RB11249	RB11247	Similar to acyl-CoA thioesterase I; Best DB hits: BLAST: swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=0.28 gb:AAB40248.1; (U82664) acyl-coA thioesterase I precursor; E=0.28 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=0.32.	Putative RecF protein; PMID: 2229036 PMID: 3762694 PMID: 1542576 best DB hits: BLAST: pir:B83548; hypothetical protein PA0787 [imported] - Pseudomonas; E=2e-96 gb:AAG45955.1; AF282921_1 (AF282921) putative RecF protein; E=7e-35 gb:AAB90237.1; (AE001034) A. fulgidus predicted coding region; E=0.005 PFAM: PF00005; ABC transporter; E=0.0014 PF00470; RecF protein; E=0.34 PF02463; SMC domain N terminal domain; E=0.11.	0.598
RB11249	RB11248	RB11249	RB11248	Similar to acyl-CoA thioesterase I; Best DB hits: BLAST: swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=0.28 gb:AAB40248.1; (U82664) acyl-coA thioesterase I precursor; E=0.28 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=0.32.	Best DB hits: BLAST: pir:T37506; protein-S-isoprenylcysteine O-methyltransferase (EC; E=0.095.	0.598
RB11249	cypX	RB11249	RB11252	Similar to acyl-CoA thioesterase I; Best DB hits: BLAST: swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=0.28 gb:AAB40248.1; (U82664) acyl-coA thioesterase I precursor; E=0.28 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=0.32.	Probable cytochrome P450 T9E850; PMID: 20411542 best DB hits: BLAST: pir:T06288; probable cytochrome P450 T9E8.50 - Arabidopsis thaliana; E=5e-14 ddbj:BAA31438.1; (AB010393) ALK6 [Yarrowia lipolytica]; E=3e-13 pir:C81286; probable cytochrome P450 Cj1411c [imported] -; E=5e-13 COG: Cj1411c; COG2124 Cytochrome P450; E=4e-14 PFAM: PF00067; Cytochrome P450; E=1e-20.	0.497
RB3252	RB11248	RB3252	RB11248	Hypothetical protein-putative transmembrane protein.	Best DB hits: BLAST: pir:T37506; protein-S-isoprenylcysteine O-methyltransferase (EC; E=0.095.	0.577
cypX	RB11248	RB11252	RB11248	Probable cytochrome P450 T9E850; PMID: 20411542 best DB hits: BLAST: pir:T06288; probable cytochrome P450 T9E8.50 - Arabidopsis thaliana; E=5e-14 ddbj:BAA31438.1; (AB010393) ALK6 [Yarrowia lipolytica]; E=3e-13 pir:C81286; probable cytochrome P450 Cj1411c [imported] -; E=5e-13 COG: Cj1411c; COG2124 Cytochrome P450; E=4e-14 PFAM: PF00067; Cytochrome P450; E=1e-20.	Best DB hits: BLAST: pir:T37506; protein-S-isoprenylcysteine O-methyltransferase (EC; E=0.095.	0.447
cypX	RB11249	RB11252	RB11249	Probable cytochrome P450 T9E850; PMID: 20411542 best DB hits: BLAST: pir:T06288; probable cytochrome P450 T9E8.50 - Arabidopsis thaliana; E=5e-14 ddbj:BAA31438.1; (AB010393) ALK6 [Yarrowia lipolytica]; E=3e-13 pir:C81286; probable cytochrome P450 Cj1411c [imported] -; E=5e-13 COG: Cj1411c; COG2124 Cytochrome P450; E=4e-14 PFAM: PF00067; Cytochrome P450; E=1e-20.	Similar to acyl-CoA thioesterase I; Best DB hits: BLAST: swissprot:P29679; TESA_ECOLI ACYL-COA THIOESTERASE I PRECURSOR; E=0.28 gb:AAB40248.1; (U82664) acyl-coA thioesterase I precursor; E=0.28 gb:AAG54851.1; AE005230_11 (AE005230) acyl-CoA thioesterase I; E=0.32.	0.497

Server load: low (18%) [HD]

Permalink

Network

Neighborhood

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Fusion

© STRING Consortium 2025

Credits

Access

Info

About