STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cpdA3,5-cyclic-nucleotide phosphodiesterase cpdA homolog; Best DB hits: BLAST: pir:C69097; 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17); E=8e-16 pir:A70360; 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17); E=7e-13 pir:F69104; 3',5'-cyclic-nucleotide phosphodiesterase (EC 3.1.4.17); E=2e-11 COG: MTH1722; COG1409 Predicted phosphohydrolases; E=8e-17 APE0113; COG0420 DNA repair exonuclease; E=0.001 HI0399; COG1409 Predicted phosphohydrolases; E=0.001 PFAM: PF02549; DNA repair exonuclease; E=4.2e-06. (304 aa)    
Predicted Functional Partners:
RB4414
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF01569; PAP2 superfamily; E=0.35.
  
     0.598
RB4410
Hypothetical protein-signal peptide and transmembrane prediction; PMID: 11481431.
  
     0.583
RB11262
Best DB hits: BLAST: pir:D83268; conserved hypothetical protein PA3023 [imported] -; E=6e-20 swissprot:P76407; YEGS_ECOLI HYPOTHETICAL 32.0 KDA PROTEIN IN; E=9e-14 gb:AAG57146.1; AE005435_4 (AE005435) orf, hypothetical protein; E=3e-13 COG: PA3023; COG1597 Uncharacterized ACR; E=6e-21 PFAM: PF00781; Diacylglycerol kinase catalyti; E=0.0004.
       0.517
RB10149
Best DB hits: BLAST: swissprot:P33450; FAT_DROME CADHERIN-RELATED TUMOR SUPPRESSOR; E=0.68 pir:IJFFTM; cadherin-related tumor suppressor precursor - fruit fly; E=0.68 gb:AAF51036.1; (AE003577) ft gene product [Drosophila melanogaster]; E=0.68 PFAM: PF00028; Cadherin domain; E=0.014 PF00801; PKD domain; E=0.0048 PF02101; Ocular albinism type 1 protei; E=0.26.
  
     0.490
RB4408
Probable cytochrome c-552; PMID: 8973648 PMID: 91255245 best DB hits: BLAST: swissprot:P74917; C552_THIFE CYTOCHROME C-552 PRECURSOR (C552); E=8e-11 pir:B83334; probable cytochrome c PA2482 [imported] - Pseudomonas; E=5e-10 pir:F81040; cytochrome C4 NMB1805 [imported] - Neisseria; E=8e-10 COG: PA2482; COG2863 Cytochrome c553; E=4e-11 VC1439; COG2010 Cytochrome c, mono- and diheme variants; E=0.002.
  
     0.449
RB3571
Probable TolB protein [Precursor]; PMID: 8921895 best DB hits: BLAST: swissprot:P44677; TOLB_HAEIN TOLB PROTEIN PRECURSOR ----- pir:; E=4e-04 pir:JC5213; tolB protein - Haemophilus influenzae -----gb:; E=0.001 pir:F82625; TolB protein precursor XF1897 [imported] - Xylella; E=0.001 COG: HI0382; COG0823 Periplasmic component of the Tol biopolymer transport; E=4e-05.
  
     0.401
RB505
Similar to myosin heavy chain; PMID: 11403381 best DB hits: BLAST: embl:CAC28360.1; (AJ306290) myosin heavy chain [Toxocara canis]; E=0.054 gb:AAD29950.1; (AF111784) myosin heavy chain IIa [Homo sapiens]; E=0.19.
  
   
 0.401
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.