STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11268Hypothetical protein. (97 aa)    
Predicted Functional Partners:
RB11269
Probable cytochrome c; PMID: 10984043 best DB hits: BLAST: pir:A83334; hypothetical protein PA2481 [imported] - Pseudomonas; E=4e-27 pir:E83075; probable cytochrome c PA4571 [imported] - Pseudomonas; E=8e-27 pir:D81360; cytochrome C Cj0874c [imported] - Campylobacter jejuni; E=8e-23 COG: PA2481; COG3258 Cytochrome c; E=4e-28.
       0.572
RB11271
Hypothetical protein.
       0.534
bcr
Bicyclomycin resistance protein; PMID: 8486276 best DB hits: BLAST: gb:AAD03845.1; (AF079317) unknown [Sphingomonas aromaticivorans]; E=2e-33 pir:T50593; probable membrane transport protein [imported] -; E=4e-24 pir:H83198; probable MFS transporter PA3573 [imported] - Pseudomonas; E=1e-20 COG: PA3573; COG0477 Permeases of the major facilitator superfamily; E=1e-21 PFAM: PF00083; Sugar (and other) transporter; E=1.9e-13.
       0.466
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.