STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11269Probable cytochrome c; PMID: 10984043 best DB hits: BLAST: pir:A83334; hypothetical protein PA2481 [imported] - Pseudomonas; E=4e-27 pir:E83075; probable cytochrome c PA4571 [imported] - Pseudomonas; E=8e-27 pir:D81360; cytochrome C Cj0874c [imported] - Campylobacter jejuni; E=8e-23 COG: PA2481; COG3258 Cytochrome c; E=4e-28. (281 aa)    
Predicted Functional Partners:
RB11271
Hypothetical protein.
       0.718
bcr
Bicyclomycin resistance protein; PMID: 8486276 best DB hits: BLAST: gb:AAD03845.1; (AF079317) unknown [Sphingomonas aromaticivorans]; E=2e-33 pir:T50593; probable membrane transport protein [imported] -; E=4e-24 pir:H83198; probable MFS transporter PA3573 [imported] - Pseudomonas; E=1e-20 COG: PA3573; COG0477 Permeases of the major facilitator superfamily; E=1e-21 PFAM: PF00083; Sugar (and other) transporter; E=1.9e-13.
       0.619
RB4115
Conserved hypothetical protein-putative nitrate reductase related protein; Best DB hits: BLAST: embl:CAC01558.1; (AL391039) conserved hypothetical protein; E=3e-27 gb:AAG19482.1; (AE005040) sulfite oxidase homolog; YuiH; E=3e-27 pir:A70013; sulfite oxidase homolog yuiH - Bacillus subtilis -----; E=6e-26 COG: VNG1084G; COG2041 Uncharacterized enzymes, related to nitrate; E=3e-28 sll1011_2; COG1357 Uncharacterized low-complexity proteins; E=1e-11 PA4692; COG2041 Uncharacterized enzymes, related to nitrate; E=2e-11 PFAM: PF00174; Oxidoreductase molybdopterin b; E=0.16 PF00805; Pentapeptid [...]
   
 
 0.616
RB11268
Hypothetical protein.
       0.572
ctaC
Cytochrome oxidase subunit II; Subunits I and II form the functional core of the enzyme complex. Electrons originating in cytochrome c are transferred via heme a and Cu(A) to the binuclear center formed by heme a3 and Cu(B).
  
  
 0.473
RB1386
Similar to nucleoside hydrolase; PMID: 10984043 best DB hits: BLAST: pir:G83627; probable nucleoside hydrolase PA0143 [imported] -; E=0.062 COG: PA0143; COG1957 Inosine-uridine nucleoside N-ribohydrolase; E=0.006 PFAM: PF01156; Inosine-uridine preferring nucle; E=0.52.
  
     0.473
RB1420
Hypothetical protein-transmembrane region and signal peptide prediction.
  
     0.473
RB6350
PMID: 10984043 best DB hits: BLAST: pir:E83450; probable cytochrome oxidase subunit (cbb3-type) PA1557; E=1e-134 pir:E81050; cytochrome-c oxidase (EC 1.9.3.1) fixN chain NMB1725; E=1e-132 pir:C83452; probable cytochrome oxidase subunit (cbb3-type) PA1554; E=1e-129 COG: PA1557; COG3278 Cbb3-type cytochrome oxidase, subunit 1; E=1e-135 NMB1724; COG2993 Cbb3-type cytochrome oxidase, cytochrome c subunit; E=8e-38 slr1137; COG0843 Heme/copper-type cytochrome/quinol oxidases,; E=6e-12 PFAM: PF00115; Cytochrome C and Quinol oxidase poly; E=3.4e-65 PF02433; Cytochrome C oxidase, mono-heme subu [...]
 
  
 0.470
RB11276
Hypothetical protein-transmembrane region and signal peptide prediction.
   
   0.464
RB4417
Cytochrome-c oxidase chain II/c precursor; PMID: 89231697 PMID: 91161592 best DB hits: BLAST: pir:A23711; cytochrome-c oxidase (EC 1.9.3.1) chain IIc precursor -; E=3e-42 swissprot:Q04441; COX2_BACFI CYTOCHROME C OXIDASE POLYPEPTIDE II; E=5e-38 ddbj:BAB06334.1; (AP001516) cytochrome caa3 oxidase (subunit II); E=2e-35 COG: BH2615_1; COG1622 Heme/copper-type cytochrome/quinol oxidases,; E=2e-21 XF1390; COG1622 Heme/copper-type cytochrome/quinol oxidases, subunit; E=1e-14 slr1136; COG1622 Heme/copper-type cytochrome/quinol oxidases,; E=3e-14 PFAM: PF00116; Cytochrome C oxidase subunit II, [...]
     
 0.453
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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