Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11279Conserved hypothetical protein-putative related to sulfatases; Best DB hits: BLAST: gb:AAK03766.1; (AE006204) unknown [Pasteurella multocida]; E=0.63. (502 aa)    
Predicted Functional Partners:
RB11276
Hypothetical protein-transmembrane region and signal peptide prediction.
 
     0.947
RB544
Best DB hits: PFAM: PF01239; Protein prenyltransferase alpha subu; E=0.28.
 
     0.780
RB5426
Hypothetical protein.
 
     0.779
RB12124
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: BLAST: gb:AAF73802.1; AF154033_1 (AF154033) surface protein PspC; E=0.82.
  
     0.775
RB12155
Hypothetical protein-signal peptide prediction.
  
     0.775
RB13124
Hypothetical protein-signal peptide and transmembrane prediction.
  
     0.775
RB213
Hypothetical protein-signal peptide prediction.
  
     0.775
RB2845
Hypothetical protein-transmembrane prediction.
  
     0.775
RB4803
Hypothetical protein-signal peptide prediction.
  
     0.775
RB5326
Hypothetical protein.
  
     0.775
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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